Rhododendron vialii: 131299024
Help
Entry
131299024 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131299024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131299024
03012 Translation factors [BR:
rvl03012
]
131299024
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131299024
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131299024
Translation factors [BR:
rvl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131299024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
131299024
NCBI-ProteinID:
XP_058180538
LinkDB
All DBs
Position
8a:complement(16544321..16569843)
Genome browser
AA seq
1202 aa
AA seq
DB search
MTYSSIFIHNYLTTSLRQPRTTLAATTTASLHLRRRSHFRPSSTPLRCPPLPRCPTLNSF
AIYHRRSSAFAAKSSAGLFSSLRFKDDSIPFLNQRNSRYGRLAYDEYGSDQEDSDREVES
GQLCASTLDNIEDWKWKLTMLMRNKDEQEVVSRERKDRRDFDQLSALATRMGLYSHQYAK
VVVISKAPLPNYRSDLDHKRPQREVILPFGLQREVDARLKGYISIKSVNEENFSDNTSLR
SGSDNSIYTGGGVHEQEEPLIRKSIVAEKILQRKSLQIRNKQQDWQESPEGQKMLEFRRS
LPAHKEKDALLNFITQNQVVVVSGETGCGKTTQLPQYILESEIEAGRGAACSIICTQPRR
ISAMSVAERVAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRSLKGVS
HVVVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGF
TYPVRSLFLENILETTGYRLTSYNQIDNYGQEKMWKMQKQSLRKRKSQIASAVEDAIEAA
DFMDYGPRTRESLSCWNPDSIGFNLIEHMLCHIIKKERPGAVLVFMTGWDDINSLKDQLQ
AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVD
CGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQL
PELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAIEYLMVIGALDANENLTV
LGCNLSMLPVEPKLGKMLLFGAIFNCLDPIMTVVAGLSARDPFLMPFDKKDLAESAKAQF
SSRDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGL
LDNTEICNTWSHDEHLIRAIICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSSSVNGQE
LKIPHPWLVFNEKVKVNSVFLRDSTAVSDSVVLLFGGNFSRGDLDGHLKMLGGYLEFFMN
PALADTYLRLKKELEELIQKKLLNPKLDLKDHNELLLTIRLLVSEDRSEGKFVFGRQLPT
PSKKATKETLLPGPRSKSSDGVGGDNSKNQLQTLLARAGHGTPSYKTTQLKNNKFRSTVI
FNGLNFVGQSCNNKKLAEKDAAAQALEWLMGETQSSEKAVDHMSMLLKKSKKKQPVQSTK
WR
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcttcaatcttcattcacaactacctcaccacttctctcagacaacctaga
acaacactagccgccactaccacagcctctctccacctccgtcgccgctcccatttccgc
cctagtagtacacccctacgctgcccgccactccctcgttgtcctacccttaattccttt
gccatctatcaccggagatcatcagcttttgctgccaaaagctccgcgggtcttttctct
tctctgcgttttaaggatgacagtatcccttttctaaatcaacggaattcacggtatggt
cgcctggcatacgatgagtatggttctgatcaggaggattccgatagggaagtcgagtcc
ggccaattgtgtgcttcaacacttgataacattgaagactggaaatggaagttaaccatg
cttatgcgcaacaaagatgaacaagaagtggtgtcgcgggagagaaaagatagacgcgat
tttgatcaactttcagcacttgcaacccgaatgggtttatatagccatcagtatgcaaaa
gtagttgttattagtaaggccccgctgccgaattacaggtctgatctggatcataagcgt
ccacagagggaggttattttaccttttgggttgcaaagagaagtagacgcgcgtcttaaa
ggatacatttctatcaagtctgtgaatgaggaaaacttctcagataatacctctttaaga
tctggcagtgacaacagtatttatactggtggtggagttcatgagcaagaggagcccttg
atacggaagagcattgtagctgagaagatccttcagcgcaagagcttgcaaattcgcaat
aagcaacaagattggcaggaatctccagaaggccaaaagatgctagaattccgaagaagt
ctcccggcgcataaagagaaagatgcattattaaacttcattacacaaaatcaggtggtg
gttgtgtcgggtgaaactgggtgtggtaagaccacacaacttcctcaatatatcttggag
tctgaaattgaagccggtcgtggagctgcatgtagtattatttgtactcaacctagacga
atatctgctatgtcagttgctgaaagagttgctgcagagcgaggtgaaaatcttggagaa
tctgttggatataaagtgcggttggagggaatgaaagggagggatactcgccttctcttt
tgcaccactggcattttgttaaggagattgcttgttgaccgaagcttgaaaggtgtatct
catgttgttgttgatgagattcatgaacgtgggatgaatgaggattttctattaattgtc
ctaaaggaactccttcctcgacgtccagaattgaggttgattttgatgagcgcaaccctg
aatgctgagcttttctcctcatacttcggtggtgctcctatgatccatattcctggcttt
acatacccagttcgaagtctttttctggagaacattttggaaacaactgggtataggcta
acttcgtataaccaaattgataattatggtcaagagaagatgtggaaaatgcagaaacaa
tctctcagaaagaggaagagccagattgcttcagctgtagaggatgcaattgaagctgcc
gatttcatggattatggcccacgaactagggagtctttatcttgttggaatcctgattca
atcggctttaatcttattgaacacatgctgtgccatattatcaaaaaggagagacctggt
gctgttttagtatttatgactggttgggatgacataaattctttaaaagatcagctccaa
gctcatccactcctgggagatccaagcagagttttactgcttgcatgccatggttccatg
gctagctcggagcagaggttaatatttgataaaccagaagatggagttaggaaaatagtt
ctggccactaacatggctgagacaagcatcacgattaacgacgtagtctttgtggttgac
tgtggaaaggccaaagagacatcatatgatgctctgaataacactccatgtttgcttcct
tcatggatctccaaggcttctgctcgtcagagaagaggtagagctggtcgtgttcaacca
ggcgaatgttaccatctgtatccgcgatgtgtatatgatgcttttgctgattatcaactt
cccgaacttctaaggacacctttgcagtctctatgcttgcaaataaaaagcttgcaactt
gggagtatttcagagttcctatcaagggctttgcaaccaccggagcctttatctgttcaa
aatgctattgaatatttgatggtcattggagctttggatgcgaatgaaaatctgacggtg
ctaggatgcaacttgtcaatgcttccagttgagcctaaactggggaaaatgctcttgttt
ggagctattttcaactgcctggatccaataatgactgttgttgctggtctaagtgccaga
gatccattcctaatgccattcgacaagaaggatcttgcagagtctgcaaaggcccagttc
tcttcgcgtgattacagcgaccatcttgcccttgtccgggcatatgatggttggaaagat
gctgaaaggcatcaatcgggttatgagtattgttggaagaatttcctgtctgcacaaact
ctgaaagccattgattcccttcggaagcaattcttttatttgcttaaggacactggtctt
ctggacaacacagaaatttgcaacacgtggagccatgatgagcatttgatccgcgccatt
atttgtgcgggtctgtttcctggcatatgctctgttgtgaacaaagagaagtctatctca
ttgaaaacaatggaggatggacaggtacttctgtactcgagttctgtgaacggccaggaa
ctcaaaattccacatccttggcttgttttcaatgagaaggttaaagtgaattctgtattt
cttcgggattcaacagctgtatccgattctgtggttctcttattcggaggaaacttttct
agaggggacctggatggacacttgaaaatgttgggaggatacttggaatttttcatgaat
cctgccttagcagatacatatctaagattgaagaaagagcttgaagaactaattcaaaag
aagcttttgaatcccaagttggacttgaaagaccacaatgagctgcttttgacaataaga
ctgttggtatcagaggacagaagtgaaggtaaatttgtttttggtcggcagttgccaaca
ccatcaaaaaaggcaacaaaagagacactacttccaggcccacgctcaaaaagtagtgat
ggtgtgggaggtgataattccaagaaccagcttcaaacattgcttgccagggctggacat
ggaacaccctcatacaagacaacacaacttaaaaacaacaagtttcgttccactgtcatc
ttcaatgggctgaattttgtgggtcagtcttgcaacaataagaaacttgcggaaaaggat
gcagcggctcaggctctcgaatggttgatgggcgaaactcaatcgtctgagaaagctgtt
gaccatatgtcgatgcttttaaagaagagcaaaaagaaacagccagttcaatctacaaag
tggaggtag
DBGET
integrated database retrieval system
