KEGG   Rhododendron vialii: 131299143
Entry
131299143         CDS       T09330                                 
Name
(RefSeq) cleavage stimulation factor subunit 50
  KO
K14406  cleavage stimulation factor subunit 1
Organism
rvl  Rhododendron vialii
Pathway
rvl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    131299143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rvl03019]
    131299143
Messenger RNA biogenesis [BR:rvl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     131299143
SSDB
Motif
Pfam: Beta-prop_WDR5 LisH_CTF50 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_Aladin ASA1 Beta-prop_WDR75_1st CFAP251_N Beta-prop_NOL10_N Cytochrom_D1 DSE1_N Beta-prop_SCAP Beta-prop_NWD2_C Beta-prop_WDR41 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 131299143
NCBI-ProteinID: XP_058180720
LinkDB
Position
8a:23004627..23030191
AA seq 442 aa
MESSNNNGSLEQTLQDGNLYRQVNAFIVAHLRDNNLNQAASAVASATMTPLNVEAPPNKL
LELVAKGLAVEKDEMLRGVSSSPLFDSGAAIPARYGSIPEPRVVAVDFSAVHDIKGASKS
FPKHETRHVSEHKNVARCARFSPDGRFLATGSADTSIKLFEVIKIKQMMLPDAKDGPVRP
VVRTFYDHLQPINDIDFHPQNTVMITGAKDHTIKFFDFSKAVAKRAFRVIQDTHNVRSVA
FHPSGDFVLAGTDHPIAHLYDVNTFQCYLSAKIQDIGVDGSVNQVRYSSTGGMYVTASKD
GAIRIWDGVTASCVRSILGAHGATEAISANFTKDQRFVLSCGKDSLVKLWEVGTGRLVKQ
YVGATHTQLRCQAVFNDTEEFVLSIDEPNNEIVIWDAITAEKVAKWPSNHIGAPRWLEHS
PTEAAFVSCGNDRSVRFWKELP
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggaaagcagcaataataatggcagcttggagcagacattgcaggatggaaatctgtat
cgtcaggtcaatgctttcatcgtagcccatcttcgcgacaacaatctcaatcaggctgca
agtgcagttgcttcagctacaatgaccccattgaatgttgaagctcctccgaataagctc
cttgaactggttgctaagggccttgcagtggagaaagatgagatgttaagaggtgtttct
tcatctccgttgtttgattcaggtgcagcaatacctgcgcgatacggttcaattcccgaa
cctcgcgttgttgctgttgatttcagtgccgtgcatgatataaaaggtgcatcaaagagc
tttccgaagcatgagacccgacatgtttcagagcataagaatgttgccagatgtgcaaga
ttcagtcctgatggaaggtttcttgcaactgggagtgcagacacatcaataaagctcttt
gaggtaataaaaatcaagcaaatgatgctgccagatgcaaaggatggtccagtgcgacca
gtcgtacggacattttatgaccatctacaaccaataaatgatatagattttcatcctcag
aatactgttatgattactggggccaaagatcatacaataaagttctttgatttttcaaaa
gcagttgcaaagagagcattcagagttatccaggatactcataatgtgcgatctgtagct
tttcatccctctggagattttgttttagcaggcaccgatcatcccattgcacacttgtat
gatgtcaatactttccaatgttatctatcagcaaaaatccaagacatcggtgtggatgga
tccgtaaatcaagtgcggtactcgtcaactggtggcatgtatgtgacagcatctaaagat
ggtgctattcgtatatgggatggggtaacagcctcttgcgtgcgttctatacttggtgca
catggtgcaacagaagccatcagcgcaaattttacaaaagatcaaaggtttgttctctcc
tgcggaaaggattctttggtgaagctgtgggaagttggcactggaagattggttaaacag
tacgtgggagctacacatacacaattgcgatgccaggctgtcttcaatgatacggaagaa
ttcgtactatccatagatgaacctaacaatgagattgtgatatgggatgcaataacagca
gagaaagtcgcaaagtggccctccaaccatattggtgcaccccgttggctcgagcactca
ccgacagaggctgcgtttgtttcctgtggaaatgacaggtccgtacgattctggaaggaa
cttccatag

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