Rhododendron vialii: 131299181
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Entry
131299181 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131299181
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131299181
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
131299181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
AAA_19
SWI2_SNF2
Helicase_PWI
DUF4852
Motif
Other DBs
NCBI-GeneID:
131299181
NCBI-ProteinID:
XP_058180771
LinkDB
All DBs
Position
8a:23774916..23837310
Genome browser
AA seq
2088 aa
AA seq
DB search
MLLQIPRLTSSLREPFDVDRAYLQRKIILQSHKSRSSANSLEESDLAKKIVYRWDEASFE
VRQAYKQFAGAVGELIDGEVVSEEFCEVALAVYHLFGKPAEEDNNGRQFTEKKLELQKLL
DHAISDVSLQKVASLAHRLSLLQSNNDSRDGFVPGNQVNGSADDVEFGANLVFRPPARFV
VDVSLEDGELWGEESALPFSLLQEGGYDCSDTTKYDSTADGKHFDLRWLRNECDKIVKGS
TSQLPQDELAMAICRVLDSEKHGDEIAGDLLDLVGESAFETVQDLISHRKELVDAVHHGL
LVVKSDKTATNSQSRMPSYGTQVTVQTESERQIDKLRRKEEKRSRRGADYGLEDDFSATS
FSSLLQASEKRSPFDDLIGSGEGSAATALPQGTVRKHYKGYEEVIIPPTPTAPMKPGEKL
IEIKELDEIAQAAFHGYKSLNRIQSRIFQTTYHTNENILVCAPTGAGKTNIAMIAVLHEI
GQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNVTVKELTGDMQLSKSELEE
TQMIVTTPEKWDVITRKSSDMSLSKLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVEST
QTMIRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSSYRPVPLAQQYIGISEHNFQARTN
LLNEICYNKVVDSLRHGHQAMVFVHSRKDTGKTADKLVELAQKNDELELFMNDTHPQFEL
IKREVLKSRNKQVVQLFEHGIGVHHAGMLRADRGLTERLFSGGLLKVLVCTATLAWGVNL
PAHTVVIKGTQLYDAKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHEKLAYYLR
LLTSQLPIESQFISSLRDNLNAEVVLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWD
EVIADPSLTLKQRSLVADAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIRYSSVETY
NEMLRRHMNDSEVIDMVAHSSEFENIVVRDEEQNELENMVRTSCPLEVKGGPSNKHGKVS
ILIQLYISRGSIDSFSLISDAAYISASLARIMRALFEICLRRGWCEMSSFMLDYCKAVDR
QIWPHQHPLRQFDKDISPEILRKLEERGADLDRLLEMEEKDIGALIRYAPGGRLIKQYLG
YFPLIHLSATVSPITRTVLKVDLLIAPDFIWKDRFHGAAQHWWILVEDSENDHIYHSELF
TLTKRMARAEPQKLSFTVPIFEPHPPQYYIRAVSDSWMHAEALYTISFHNLQLPEGRTSH
TELLDLKPLPVTALGNKTYEALYKFSHFNPIQTQSFHVLYHTEENTLLGAPTGSGKTISA
ELAMLHLFNTQPDMKVIYIAPLKAIVRERMNDWRKRLVSQLGKKMVEMTGDYTPDLMALL
SADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TERAVRFVGLSTALANAHDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPTYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQPRQFLNVSEETLQMI
LSQVTDQNLRHTLQFGIGLHHAGLNDRDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEFYDAKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHDPKKSFYKKFLYE
PFPVESSLREQLHNHINAEIVSGTICHKEDAIHYLTWTYLFRRLMVNPAYYGLEDTGPGI
VSSYLSSLVQNTFEDLEDSGCVKMNEDSVEPMMLGSIASQYYLKYMTVSMFGSNIGPDTS
LEVFLHILSGSSEYDELPVRHNEENYNEALSAKVTYMVDKNRLDDPHVKANLLFQAHFSQ
LELPITDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSTITCMHLLQMVMQGLWFGSNTA
LWMLPCMTDDLVGSLSRRGISNVQQLLDLPRSNLQALIGNSNASRLYQDLDHFPRVQVRL
KLQKKNPDDGKAITLNIRLEKTNSHCKTSRAFTPRFPKLKDEAWWLVLGNTSTSELYALK
RVSFSDRLATHMELPSTPNTIQGMKLILVSDCYLGFEQEHSVEELVEP
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttcagattccacgcctaacgagttctctcagagaaccattcgacgtcgatcgc
gcttatctccaacgcaaaatcatcctccaaagccacaagtctcgaagttctgcgaattcg
ctcgaagagtcggaccttgcgaaaaagatcgtttaccggtgggatgaagcttcgtttgaa
gtgcggcaagcgtacaagcagtttgcaggtgcggttggggagttgatcgatggggaggtg
gtgtcagaggagttttgtgaggtggcattggccgtttatcacctttttggtaagccagcg
gaggaggacaacaatggcagacagttcacagagaagaaattagaattgcaaaaactactc
gatcatgccatttcggatgttagtctgcagaaagttgcctctctagcccataggctgtcc
cttttacagtctaataatgacagtagagacggatttgttcctggaaaccaagtaaatggg
agtgctgatgatgtagaatttggtgctaaccttgtttttcgaccccctgcgcggtttgta
gttgatgtgtctttagaggatggggaattgtggggggaggaaagtgctctacctttttct
ctgcttcaagagggaggctatgactgcagtgacactacaaagtatgattccactgcagat
ggtaaacattttgatttgcggtggttgagaaatgagtgtgataaaatagtaaaaggaagt
acttcacagcttcctcaagatgagctagcaatggctatctgccgtgtacttgattctgag
aaacatggtgacgagatagctggtgacttgttggatcttgttggagagagtgcatttgaa
acagttcaagatctaatatcgcatagaaaggaacttgttgatgctgttcatcatgggttg
ctagtagtgaaatctgacaaaacggctacaaactctcaatcacgcatgcctagctatgga
actcaggttactgttcaaacagagtctgaacgacaaattgacaaacttcggcggaaggag
gaaaagcggagtagacgtggggcagattatggattggaagatgacttctcggccacgagt
tttagttctttactccaagcaagtgaaaagagaagcccatttgatgatttgattgggtct
ggtgaagggtcagcagcgactgcccttccccaagggacggtcaggaaacactacaaggga
tatgaagaagttattattcctccaacaccgactgcaccaatgaaaccgggggaaaaattg
attgagataaaggagctggacgagattgctcaagctgctttccatggttacaagtctcta
aaccgtatccagagcagaatctttcaaactacttatcacactaatgagaacatactagtt
tgtgctcctacaggagctggtaaaacaaatatagctatgattgctgttctgcatgagatt
ggacagcacttcaaggacggttacttgcataaagatgaatttaagatagtttatgttgct
cccatgaaggcattagctgcagaagttacttccacttttagccatcgtttatctccactg
aatgtcacggtgaaagaacttactggagacatgcaactttctaagagtgaacttgaagaa
actcagatgattgttacaacacctgagaaatgggatgttattactcgtaaaagtagtgac
atgtcactttcaaagcttgtgaagctcctaattattgatgaagtacatcttttgaatgat
gatagaggccctgtaattgaagccttagttgctcgaacccttcgtcaggtagagtccaca
cagaccatgatacgtattgtggggctctcagctactctaccgaactatttggaggttgca
caattcctgagggtgaatccagatgcaggtcttttcttctttgattccagctaccgccct
gttcctcttgcacagcagtatattggaattagtgagcacaactttcaagctcggaccaat
ctgttgaatgaaatatgctacaataaggttgttgattcactgaggcacgggcatcaggct
atggtttttgtacattcaaggaaagacacagggaaaaccgctgataaactggttgaactt
gcccagaagaatgatgaacttgagctctttatgaatgatacacatccacagtttgagttg
atcaagagggaagtgttgaagtcaaggaataagcaggttgttcaactttttgaacatggc
atcggtgtccatcatgctgggatgttacgcgctgatagaggtttgactgagcgccttttt
tctggtggactcttgaaagtactagtttgcacagcaactttggcatggggagtaaatcta
cctgctcacactgtggtgattaagggaactcaattatatgatgccaaggctggcggctgg
cgagacctggggatgcttgatgttatgcagatctttggacgtgctggaagacctcagttt
gacaaaagcggggagggcattataatcaccactcatgaaaaattagcctactatctacga
ctgctaacaagtcaacttcccattgaaagtcagtttatcagctctttgagagataattta
aatgctgaggtggttcttggcactgtaacaaatgtgaaggaagcttgtgcatggcttggg
tatacatatctttttataaggatgaaaatgaatcctttggcttatggtatcggatgggat
gaggttattgcagatccttctttgactttaaagcaaagatcccttgtggcagatgctgct
cgtgcacttgacaaagcaaaaatgatgcggtttgatgagaaaagtgggaatttttactgc
actgagcttggtcgaattgctagccatttttatattcgatattctagtgttgaaacttac
aatgaaatgttgagacgccacatgaatgatagtgaggtaattgacatggtagctcattcc
tctgagttcgaaaatattgtcgttcgagacgaggaacaaaatgagctggaaaatatggtc
cggacatcatgcccgttggaagttaagggtggaccttcaaacaaacatggaaaagtttcc
attctcatccagctgtacatttctcggggctcaatagattctttttcattgatttccgat
gctgcatatataagtgcaagcttggctcgtatcatgcgggctttgtttgagatctgtttg
cgtagagggtggtgtgagatgtcttccttcatgttggattattgcaaggctgtggatcgt
caaatttggccccatcaacatcccctcagacaatttgacaaggatatctcaccagagatt
ctgaggaagcttgaagaacgaggtgctgacttagatcgcctcctagagatggaggagaaa
gatattggagctctgatacgttatgcacctggaggaaggttgatcaagcaatacttgggt
tactttccattgatccacttgtctgcaactgtaagtccaatcaccaggactgttttgaag
gtggatttgctcatagctccagacttcatatggaaggatcgctttcatggggctgcacaa
cattggtggattctggttgaggactctgagaatgaccacatctaccattccgagcttttc
acattgacaaagcggatggcaagagcggaaccacaaaagctttcctttactgtgccgatc
tttgaaccacacccacctcaatattacattcgtgctgtttctgattcttggatgcacgca
gaggctttatatacaatatctttccacaatctacaacttccagagggtcgtacatcccac
accgagctgctagacttgaaacctctccctgtgacagcacttggcaacaaaacttatgaa
gccttgtacaagttttctcacttcaatcctattcaaactcagagttttcatgtcctttac
cacacggaagagaatactctcttaggagctccgactggtagtgggaaaactatatctgct
gagcttgctatgcttcatctgttcaacacccagcctgacatgaaggtcatttacatagca
cccctgaaggctatcgtccgagagagaatgaatgactggaggaagcgtctcgtttctcaa
ctcggaaagaagatggttgaaatgacaggggattacactccagatttgatggctctactg
tcagccgatatcatcatttctacgccggaaaagtgggatggtattagtcgtaattggcat
agtagaagctatgtcacaaaggttgggcttatgattttggatgaaattcacttacttgga
gctgatcgtgggccaattcttgaggtaattgtatcaaggatgagatacatatcatcgcag
acagagcgtgcagttcgatttgtgggcctttcaacagccttagcaaatgcacatgatttg
gctgactggctgggggttggtgaaattggactgttcaacttcaagcctagtgtgaggcca
gtacctctcgaagttcatattcaggggtacccagggaagttctactgtccacggatgaac
agcatgaataaaccaacgtatgctgccatatgtacccattcacctgcaaaaccagttctt
atatttgtttcgtctcggcgccagacgaggctcactgcactagacctaattcagtttgca
gcctcagatgagcaaccacggcaatttcttaacgtgtcagaagaaacactacagatgatt
ctttctcaagtcacagatcagaatctgcggcacactttacaatttggcattgggttacac
catgcaggactgaatgacagagacagatctctggttgaggaactttttgcaaacaacaag
atccaggtattggtttgcactagcacattggcatggggagtaaaccttccagctcatctg
gttattatcaagggaacagaattttatgatgcaaaagcaaaacgatatgtagattttccc
atcacagatatcttgcaaatgatgggtcgtgcaggtcgaccacagtatgatcaacatggg
aaagctgtcattcttgttcacgatcccaaaaagagcttctacaagaagtttctgtatgaa
ccattcccagttgaaagtagtctgagggagcagttgcataaccacattaatgctgagata
gtttctggaactatttgccataaagaggatgcaattcactaccttacctggacttatttg
tttcggagattgatggttaatccagcttactatggcttagaggatactggacctggaatt
gtgagttcgtatttgtcaagcttggtgcaaaacacctttgaggatctggaagacagtggg
tgtgtgaagatgaatgaagacagtgtggaacctatgatgttgggctcaatagcttctcag
tattacctgaagtacatgactgtttcaatgtttggttcaaacataggcccagatacgtct
cttgaagttttccttcacatactgtctggttcttctgaatatgatgagcttcctgtgagg
cataatgaggaaaactacaatgaagcattgtctgcgaaagttacatacatggtggataag
aatcgtttagatgatccacatgttaaagcgaatctactttttcaggcccacttttctcaa
ttagaactaccaatcacagactatgtcactgacttgaaatcagtgcttgatcaaagcata
cgtatcatacaggccatgatagatatatgtgctaacagtggatggctttcaagtacaatc
acctgtatgcatcttcttcaaatggtcatgcagggtttatggtttggcagcaacactgct
ctatggatgttgccatgcatgactgatgatcttgtgggttccctaagcagaaggggaatc
tcaaatgtgcaacaactgctggatcttcctcggtctaatctgcaagctctaattggaaac
tcaaatgcttcgagattatatcaggacctggatcattttcctcgtgtccaagttagatta
aaacttcagaaaaagaatcctgatgatgggaaggcaataactttgaacattagattggaa
aaaacgaattcccactgcaaaacatcaagagcttttacccctcgatttccgaagttgaaa
gatgaagcatggtggttggtccttggtaacacctcaacctctgagctctatgctctgaag
agagtttccttctccgatcggctggccacccacatggagttgccatcaactccaaatact
atccaggggatgaagctgattctagtatcagattgttaccttggttttgaacaagagcac
tccgtggaagaacttgttgagccttaa
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integrated database retrieval system
