Rhododendron vialii: 131299241
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Entry
131299241 CDS
T09330
Name
(RefSeq) polyadenylate-binding protein 6-like
KO
K13126
polyadenylate-binding protein
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131299241
09123 Folding, sorting and degradation
03018 RNA degradation
131299241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131299241
03041 Spliceosome [BR:
rvl03041
]
131299241
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131299241
mRNA cycle factors
Stress granule specific factors
131299241
Spliceosome [BR:
rvl03041
]
Complex C
Other components
Complex C specific factors
131299241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBD_DEAH11
RRM_10
RRM_5
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
131299241
NCBI-ProteinID:
XP_058180860
LinkDB
All DBs
Position
8a:33684521..33690239
Genome browser
AA seq
615 aa
AA seq
DB search
MSKFEDEKKTMAAQAVAPPPSPGRTPPLASLYVGDLDPQATEIDLFETFRQMGPLVSVRL
CRDRLSHQSLRYAYVNFFSPSDASKALACLNHTELKGKPMRIMWRQNNPLTRKTGVGNVF
VKNLDPCITSAWLQGIFCKFGTILSCKVAEEHGKSKGFGFVQFDSEDSSVTAVNALHGTM
LEGKNLYVSKFVKKSERKDAYEEPKFANLYVKNLGEFVTEDILVEKFSEYGKVRNVLIMK
DDEGKSKGFGFVNFESYEEAKKAVEALNGSLLGSEKLFVGRAQKKAEREELLKREHKLTN
SNIEMPKVSNLYVKYLGASVDEGQLEEHFGAFGKVTSAKVMRHESGISKGFGFVNFSTPA
EAKRALDALHGTDFKGRDLYVSVAQSKEERQREMQSNTHHPPRAFYPSDSKSYTPILDQA
YCGFPPFPTTNQAMMYRQCVRSEGAMYPFMAQGYHRNDSAYIPSRQSQQQTYLDFAYQHP
MGYPDSISPTRNLDYRSFRSLQISRDKRSRAEQVYSKGYVGTRSFNPAPYLGNCNQNAGK
KLHPLGENLQRGHEAKKTGVVLEMKKSDAHEVLNSSQSPAAHLGKTIQVPGDVNSWTIRD
DRVAQLHKSARCLSY
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagttcgaagacgaaaagaagacaatggcggcacaagcggtggctccgcctccg
tctcctggcaggactcctccactggcgtcgctgtacgtgggtgatctggacccacaagca
acggagatcgacctcttcgaaaccttccgccaaatgggtccactcgtctccgttcgcctc
tgcagagacagactctcccaccaatctcttcgttatgcttacgtcaacttcttctctcct
tctgacgcctctaaggctctcgcttgtctgaaccacactgaattgaaggggaaacccatg
agaataatgtggcgtcaaaacaaccctcttactagaaagactggtgtcggcaatgtcttc
gtcaagaaccttgacccttgtattaccagtgcttggttgcagggaattttctgcaaattt
ggaactatactttcttgcaaggtagctgaggaacacgggaagagcaagggtttcggtttt
gttcagttcgattcagaggattcttccgtgactgctgtcaatgctctccatggcacaatg
cttgaaggaaagaatttatatgtgtccaaatttgtaaagaaaagtgagagaaaggatgct
tacgaggaaccaaaatttgcaaatctctatgtcaaaaatctgggcgagtttgtgacagaa
gacatccttgtagaaaagttttctgaatatgggaaggtccgcaatgttttgatcatgaaa
gatgatgaggggaaatcaaagggtttcggatttgtcaactttgagtcatatgaggaggct
aagaaggctgttgaggccttgaatggttcactcctaggatcagagaagttgtttgttgga
agggctcagaagaaggccgaaagggaagagcttctgaaacgtgaacacaagttaaccaat
tccaatattgaaatgcccaaggtttcaaatctgtatgtgaagtatcttggtgcatctgtt
gatgaaggacaactagaagaacattttggtgctttcggaaaggtgacttctgcaaaagtg
atgcgccacgaaagtgggattagtaaaggatttggctttgtgaacttctccactcctgca
gaagcaaagagggctttggatgcacttcatggaactgactttaaaggaagggatctgtat
gtgtctgtagctcagagtaaagaagaacgccaaagagaaatgcagagtaatacacaccat
ccacctcgggctttctatccttctgattccaaaagctatacccctattcttgatcaagcc
tattgcggtttccctccttttcctactacaaatcaggcaatgatgtacagacagtgtgtt
agaagtgagggtgcaatgtacccgtttatggcacaaggttaccacagaaatgattctgca
tacattccttcaagacaatcgcagcaacagacctacctggactttgcttaccaacatcca
atgggatatccggactctatttcacccaccagaaatctagactacaggagtttcaggtct
ctgcagatatcaagggacaagagaagcagagctgaacaagtttattctaaaggctacgtg
ggtacaagaagttttaacccagccccatatcttggaaactgcaaccaaaatgccgggaaa
aaacttcaccctctgggggaaaatctgcagcgtgggcatgaggcaaagaaaacaggagtg
gtgttggaaatgaagaaatctgatgcccacgaggtactaaactcatcacagtccccagca
gcgcatcttgggaaaacaatacaagtgccgggggatgtaaactcgtggaccattcgcgat
gatcgtgttgctcagctgcacaagtccgcccgctgcttgagctactga
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