Rhododendron vialii: 131300498
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Entry
131300498 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131300498
03041 Spliceosome [BR:
rvl03041
]
131300498
03036 Chromosome and associated proteins [BR:
rvl03036
]
131300498
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131300498
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131300498
mRNA cycle factors
Common to processing body (P body) and stress granule
131300498
Spliceosome [BR:
rvl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131300498
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131300498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131300498
NCBI-ProteinID:
XP_058182364
LinkDB
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Position
1a:36028415..36035006
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AA seq
611 aa
AA seq
DB search
MLSSWADSVAAAEKAAAGSAANNGSVGTTSAPTRSTYVPPHLRNRTPSSEPPAPAPVQGG
STFAPSGGNRWVSGPRSDNSRPGYSSGGGGGWNNRSGGWDRGREREVNPFAEEDNTEQEL
GEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHA
IPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQFAQRPRGRVAFPLALILSPTRELS
VQIHEEAKKFAYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLE
MIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTLLFSATFPKEIQRLASDFLSS
YIFLAVGRVGSSTDLIVQRVEFVHEADKRSHLMDLLHAQKANGVHGKQALTLVFVETKKG
ADSLEHWLCMNGFPATTIHGDRTQQEREYALRSFKSGNTPILVATDVAARGLDIPHVAHV
VNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSLARSLAELMQESNQEVPAWLSR
FAARSSYGGGGKNRRSGGGRFGGRDFRRDSSFNRGGGGDYYSGGSGYGGAASSGGYAGGY
GGGQGMTSAWD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgctgagttcatgggctgattcggttgctgcagctgagaaagctgcggctggttctgct
gcaaataacgggagtgttggtaccacttcggctccaactcgatcaacttacgttcctcca
catctacgcaatcgaacaccttcatcggaaccaccagctccagctccagttcaaggtgga
tcaacttttgccccatctggtgggaatcgttgggttagtggtcctaggagtgataatagt
cgacctgggtacagcagcggcggcggcggtggttggaacaacagaagtggtggttgggat
agggggagggagcgagaagttaacccctttgcagaggaagacaatacagagcaagagttg
ggtgaacaggagaatactgggattaactttgacgcatatgaagatattccggttgagact
agtggggataatgtgccgcctcctgtgaatactttcgcagagatcgacctgggtgaagca
ctcaatcaaaatatacggaggtgcaagtacgtgaagcctacaccagtgcagcgacatgcc
ataccaatttcccttggaggtagggatttgatggcttgtgcccagactgggtctgggaaa
acagctgctttctgcttcccaataatcagcggaattatgacaggacagtttgcacagaga
cctcgtgggcgtgtagctttcccacttgctcttattctctctccaacgagagagctctca
gtgcaaattcatgaagaagctaagaaatttgcttatcaaactggtgtcaaggtggtcgtc
gcttatggtggagcacctattaaccagcagctccgagaactggaaagaggggttgatata
cttgtggcaaccccagggcgactggtagatttgctggagagggcaagggtatcattagag
atgataaagtatctggctcttgacgaggcagatcgaatgctggatatgggttttgaacct
caaataaggaaaatagtggaacaaatggacatgcctccaccaggtgtcagacagacattg
cttttcagcgccacctttccgaaagagatacagagactggcatctgattttctttcaagt
tacatttttctggctgttggacgagttggttctagtactgatctaattgttcaaagggtg
gaatttgttcatgaagctgacaagagaagccacctcatggaccttctccatgcacagaag
gcaaatggtgttcatggcaagcaagctctgacactggtgtttgtggagactaagaaggga
gctgattcactggaacattggctgtgtatgaatggttttcctgctactactattcatggt
gacagaacacagcaggaaagggaatatgccttgaggtcattcaaaagtggcaacacgccg
attctagtcgcgacagacgtggcggcacgtggtctcgatatcccccacgttgcgcatgtg
gtcaattttgatcttccgaatgacatagacgattatgtccaccggataggccggacaggt
cgagctggcaagtcagggttggccactgccttcttcaatgagaacaactcttcattggct
aggtcactggctgagttgatgcaagaatcaaatcaagaagtacccgcttggctttcccgc
tttgcggctcgatcttcctatggtggtggcgggaagaaccgtcgttctggcggagggcgg
tttggtggtagggatttccgacgagattcatctttcaataggggcggcggtggggactac
tacagcggaggttccggttatggtggtgctgcctctagtggtggttacgctggaggatat
ggcggtggtcagggtatgacaagtgcgtgggactag
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