Rhododendron vialii: 131300520
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Entry
131300520 CDS
T09330
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131300520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131300520
03041 Spliceosome [BR:
rvl03041
]
131300520
03036 Chromosome and associated proteins [BR:
rvl03036
]
131300520
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
131300520
Spliceosome [BR:
rvl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131300520
Complex B
131300520
Complex C
U2 SnRNP specific factors
131300520
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
131300520
TFTC complex
131300520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
131300520
NCBI-ProteinID:
XP_058182397
LinkDB
All DBs
Position
9a:complement(35041492..35140833)
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYNLTLHQATGIICAINGNFSGGKTQEIVVARGKVLDLLRPDDNGKIQTLLSVDIFGA
IRSISQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYI
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYNICGVDCGFDNPV
FAAIELDYSEADQDSTGLAAAEAQKVLTFYELDLGLNHVSRKWSEQVDNGANMLVNVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRGDLPAERGVLVVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDEPDVESSSATLMETEDGYQPVFFQPRKLKNLVRIDQVESLMPIMDMKVANLFDEETPQ
LFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRVNEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNCIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSVVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYEALEYAASFSSDQCAEGVVSVAGDALRVFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLLVIIESDQGAFTAEEREASKKECFEDAGMGENGKVENMENGGDDEDKED
PFSDEQYGYPKAESEKWVSCIRVLDPRSANTTCLLELQDNEAAFSICMVNFHDKEYGTLL
AVGTAKGLQFWPKRSITAGYIHIYRFVEEGRSLELLHKTQVDGVPLALCQFQGRLLAGIG
SVLRLYDLGKRRLLRKCENKMFPNTINSIHTYRDRIYVGDIQESFHYCKYRRDENQLYIF
ADDSVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVTCLQKASLIPSGGECLLYGTVMGSLGALLAFTSRDEVDFFSHL
EMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEI
LKKLEEVRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacaacctcaccctccaccaagccaccggcataatctgcgccatcaacggc
aacttctccggcggcaagacccaggagatcgtcgtcgcccgaggcaaagtcctcgacctc
ctccgtccagacgacaacggtaagatccaaaccctactctccgtcgatatcttcggcgcc
atacgttccatctctcagtttcgcctaaccggcgcccaaaaagactacatcgtggtcggg
tccgactcgggtcggatcgtgatcctcgaatacaacaaggagaaaaacgtgttcgataaa
atccaccaggaaaccttcgggaaatccggctgtcgccggattgtcccaggacagtacata
gcggtcgaccccaagggccgggccgttatgattggggcctgtgagaagcagaaactagtt
tacgtcttgaatagggatacggcggctaggttaacgatttcgtccccgttagaggcgcat
aagtcgcacacgattacgtataatatatgtggggtggattgcgggttcgataaccctgtg
tttgcggcgattgagttggattactcagaggcggatcaggattcgactgggctggcggct
gccgaggcccagaaggtgcttactttttacgagcttgatttggggttgaatcatgtttct
aggaaatggtctgagcaggttgataatggtgctaatatgcttgttaatgttccgggtggt
ggtgatggacctagtggtgtgcttgtgtgtgctgagaattttgttatatataagaaccag
ggtcacccggatgtgcgtgctgtcattcctaggagaggggatttaccggctgaacgtggg
gtccttgttgtttctgctgctatgcacaagcaaaagtctatgttcttctttcttttgcaa
acggagtatggggatattttcaaggttactttggatcatgacaacgaccgtgtgaaggag
ttgaagattaagtatttcgacacgatacccgtgacatcttccttatgcgtattgaaatcc
gggtttctttttgctgcttcggagtttgggaatcatgctttgtatcagtttcaggctata
ggggatgagcctgatgtagagtcttcatcagctactttaatggaaacagaagacggttac
cagcctgtgtttttccagcctagaaaactgaagaaccttgttaggatcgatcaagttgaa
agcttgatgccaataatggacatgaaagttgcaaacctttttgacgaagaaacccctcaa
ctattctccctctgcgggaggggtccccgttcatctctaaggattttaaggcctggtttg
gccataagtgaaatggcagtgtcccagcttcctggtgttccaagtgctgtctggacagtg
aagaaaaacgtaaacgacgagtttgatgcttacattgtcgtttcctttgcaaatgcaact
cttgtcctttcaattggtgagacagtcgaggaagttagcgatagtgggttccttgatacg
accccgtcgctctctgtttctttgataggtgatgattctttaatgcaagttcatcctagt
ggtattaggcatataagggaagatgggcgtgtgaacgagtggagaactcctggaaagagg
acaattgttaaggttggctctaacagacttcaagtggttattgcgctgagtggaggggag
ctgatatattttgaggtggatatgactggtcagttgatggaggttgaaaaacatgaaatg
tctggggatgttgcttgtttggacattgctcctgttccagaagggcgacaaaggtcccgt
ttcctagctgttggatcgtatgacaactgcatccgtatcttatctctggatcctgatgat
tgtatgcaagtcttaagtctacaaagtgtctcctcgcctcctgaatctcttctctttctt
gaagttcaggcttctgttggtggggaagatggtgcagatcaccctgctagccttttcctc
aatgctggtttgcagaacggggttttgttcagaacagtggtggatatggtgacaggtcag
ctttcggatgcccgttcgcgattcttaggactcagagccccaaagttattttctgtggtt
gtgagagggcggcgtgctatgctttgcttgtcaagcagaccatggcttggttacatacac
cagggtcacttccttctaacacccctttcttatgaggctcttgaatatgcagcttctttc
tcatctgatcagtgtgcggaaggcgttgtctctgttgctggggatgcattgagggttttt
actattgagcgattgggggaaacgttcaatgaaaccgcgatacctttaaggtacacccca
aggaagtttgtgcttcaaccaaagagaaaacttttggtaattattgagagtgatcaaggg
gcatttacggcagaagagcgggaagctagtaaaaaggagtgctttgaggatgctggaatg
ggggaaaatggcaaggtggaaaacatggagaatggtggcgatgatgaggataaggaggat
cccttctctgatgagcagtatggttaccctaaggcagagtcagagaagtgggtttcttgt
ataagggttcttgacccaaggtcggcaaacactacctgtttgctggagctccaggataat
gaggctgctttcagcatttgcatggtgaatttccatgataaggagtatggaaccctttta
gccgtgggtacggcaaaggggttgcaattttggcccaaaagatctatcacggccggttat
attcacatctataggtttgtggaagaggggagatcccttgagcttttgcacaagacacaa
gtcgatggtgttcctcttgccttgtgccagttccagggaagattacttgctggaatagga
tctgtgctcagattgtatgatttggggaaaaggaggttgcttagaaagtgtgagaataag
atgttccccaacacaatcaactctattcatacctatcgtgatcgtatttatgtaggtgac
attcaggagtcattccactattgcaaatatagacgtgatgaaaatcagttatatatattt
gccgatgattctgttccaagatggcttactgcatcataccatatagattttgacaccatg
gctggtgcggacaagtttgggaatatctattttgtgcgtttgcctcaggatgtctcagat
gagattgaagaagatccaactggcgggaagataaagtgggagcaggggaagctgaatgga
gctcctaacaaggtagaggaaatagtgcagtttcatgttggtgacgtggtcacatgcttg
caaaaggcttctctaattccaagtggtggagagtgcctcctttatgggactgtgatggga
agtttgggtgcattacttgctttcacttctcgagacgaagttgacttcttttctcacttg
gagatgcatatgaggcaggaacacccgcctttgtgtggaagagatcatatggcctatcga
tctgcctattttcccgttaaggatgtgattgatggagatttgtgtgagcagtttccaaca
ttgcctatggatttgcaacggaaaatagcagacgaattggatagaactccgggagagatt
ctgaagaaacttgaagaggttcgaaataagatcatttga
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