Rhododendron vialii: 131302081
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Entry
131302081 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131302081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131302081
03012 Translation factors [BR:
rvl03012
]
131302081
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131302081
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131302081
Translation factors [BR:
rvl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131302081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
Dicer_dimer
ATPase
ABC_tran
AAA_11
NPHP3_N
NACHT
AAA_16
AAA_23
PhoH
Motif
Other DBs
NCBI-GeneID:
131302081
NCBI-ProteinID:
XP_058184661
LinkDB
All DBs
Position
9a:complement(26876767..26992887)
Genome browser
AA seq
1312 aa
AA seq
DB search
MIFRPMASILRLLLVPSTDESALYGETRQQKTSEMYMKQLEVVRLLRALFRMKAQQCSFD
FKKDINANPRELLFLLLSSYGATLSEVDLEIYSLMLEIESANLSNSGSIAEMDYLWGSAA
IRIRKEREQEQDLSSHMMKDVEAVEGRRTQFRENLPIDPKLCAYTVLHFPIGRNVSEVQH
GDSDDMNEVVKNSVKVHKLARHLVEHCSIISWLSSIVSVFCGKQYQAQTNLPFPLSNRAL
EGASTCDYIEGWKWKMTTLLRSKEKQELVSRDKKDRLDFEQIAALASKMGLYSHLYVKVV
VVSKVPLPNYRFDLDERRPQREVSLPLGLQKRVDSYLGDYLSQKSRNMDSFQDNGFSRSN
SSCSVATDEGLFEQPEPLPQSKAAMEKVIWRRSTQMRSQQQAWQESPEGRKMLEFRRSLP
AYKEKNALLMAISNNQVVIISGETGCGKTTQIPQFILESEIESVRGVLCSIICTQPRRIS
AMSVSERVAAERGEKLGETVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTYV
IVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAPMVHIPGFTY
PVHTHFLENVLEMTGYQLTPYNQIDDYGQEKTWKMNKQAPRKRKSQLASAVEDALRAADF
KNFGPETQESLSCWNPDSIGFNLIEYLLCNICEKETPGAVLVFMTGWDDISSLKDKLQAH
PMLGDTSRVLLLACHGSMASAEQKLIFDEPEDGVRKIVLATNIAETSITINDVVFVIDCG
KAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYEAFADYQLPE
ILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKVIGALDEDENLTVLG
RYLTMLPMEPKLGKMLILGAIFNCLDPVLTVVAGLSVRDPFLTPMDKKDLAEAAKAQFSR
DYSDHLALVRAYEGWKEAERDLAGYEYCWKNFLSAQSMKAIDALRREFYSLLRDAGLVDS
TTTTCDSWSYDVHLLRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARDSK
IPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSILRGDTDGHLKMLGGYLEFFMKPA
TAEMYQSLRKELEELIQNKLLNPRMVLSHHELLSAVRLLISEDQCDGRFVFNRQVLQQPS
VTTIATRPAVVSRIESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLNNNQFRATVEFKGM
QIMGRPCNNKKQAEKDAAAEALECLMGGTHRGHDYVENMSMMLKKSKKDHNG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgatctttaggcctatggctagcattctgaggttacttcttgttccatctactgatgaa
agtgcactttatggagaaactaggcaacaaaaaacatcagagatgtacatgaaacagttg
gaagtggttaggttactgagggctctgtttcgaatgaaggctcagcagtgtagttttgat
ttcaaaaaggacattaatgcaaatcctagagaattgcttttcttgcttctatcttcttat
ggtgcgacactcagtgaagttgacttggaaatatacagtctcatgcttgaaattgagtct
gctaatctgtcaaactctggaagcattgctgaaatggattacctgtggggaagtgctgct
attagaattagaaaagaacgagaacaggagcaggatctgtcgtctcatatgatgaaggat
gttgaagcagtagaaggccgaagaactcaattcagggaaaacctccccattgaccccaaa
ttgtgtgcatatactgttttacattttcctattggaagaaacgtttctgaggttcaacat
ggcgattctgatgatatgaatgaggtggtaaagaactctgttaaagttcataaattggct
cgtcatctagttgagcactgtagtattatttcatggttatcatcaatagtttcagtcttc
tgtgggaagcaatatcaagctcagacaaatttaccattccctctgtcaaacagagcactg
gagggtgcttccacctgtgattacatcgaagggtggaaatggaagatgactacgctttta
cgtagcaaagagaaacaagagctggtttcaagagacaaaaaggatagacttgattttgag
caaatagcagctttggcaagcaaaatgggtttgtatagccatctatatgtaaaagttgtt
gtcgtaagtaaggttccattgccaaactacagatttgatctggatgagaggcgtcctcag
agagaggtgagcttaccgcttggtctgcaaaagagagtggattcttatcttggagattac
ctttctcaaaagtctcggaatatggacagtttccaggataatggcttttcaagatcaaac
agtagttgtagtgttgccactgatgaggggctttttgagcaaccagagccactacctcag
agtaaagctgctatggagaaagtcatttggagaagaagtacgcaaatgcgcagccagcaa
caagcttggcaggaatctccagagggtagaaagatgctggaatttcgtagaagtctccct
gcttataaagagaagaatgccttattgatggccatttcaaataatcaggttgtcattatc
tcaggtgaaactgggtgtgggaagaccacacagattccccaattcattctggaatctgag
attgagtctgttcgtggagtcctatgtagtattatctgtactcaacctcgccgtatatct
gctatgtctgtttcggaaagggttgctgcagagaggggagagaaattgggtgagacggtt
ggttataaagttaggctggagggtatgaaagggagggacacccaccttctcttctgcacg
acaggcatcttgttgagaagattactggcagacagaaatctgaagggtgttacttatgta
attgtcgatgagattcatgagcgtggaatgaatgaagattttttgctcatcgtactaaaa
gatcttcttcctcgtcggccggaactgaggctaattttgatgagtgcaaccttagatgct
gagcttttctcttcctacttcggtggggctccaatggttcatattccgggctttacctac
cctgttcatactcatttcctggaaaatgttctggaaatgactggataccagttgacccca
tacaatcaaatagatgattatggtcaggaaaagacatggaaaatgaacaaacaagctcca
agaaagaggaagagccaactcgcttcagctgtcgaggatgctctcagagctgctgatttt
aagaattttggcccagagacacaagaatctttgtcctgttggaatcctgattctattggt
tttaatctgattgaataccttctatgcaatatatgtgagaaagaaacacctggagctgtt
ttagtttttatgacggggtgggatgacataagctccctgaaggataagcttcaagctcat
ccaatgttgggagatacaagccgagttttgttgcttgcatgccatggttctatggccagt
gcggagcagaagttgatatttgatgagcctgaagatggagtgaggaaaatagtacttgca
actaatattgccgagacgagtataacaattaatgatgttgtttttgttatcgactgtgga
aaggcaaaagagtcctcgtatgatgcattgaataacactccttgcttgcttccttcttgg
atttcaaaggtttctgctcaacaaagaagaggaagagctggccgtgttcaaccaggagaa
tgttaccatctgtatcccagatgtgtgtatgaagcttttgccgactatcagttgccagaa
attttaagaacacctttgcagtctctttgtcttcaaataaaaagtttgaaacttggaagc
atttctgaattcctatctagggctttgcagtcaccagaattactagcggttcaaaatgct
attgaatatttaaaagtcattggggctttagacgaggatgagaatttgactgttcttgga
cgctacttgacaatgcttccgatggagcccaaacttgggaagatgctaatacttggagcc
atatttaattgtctggatcctgtactgactgttgttgctggtcttagtgtccgagatcca
ttcctaacaccaatggacaagaaggatctagcagaagcagcaaaagctcaattttctcga
gattatagtgaccaccttgctcttgtccgggcctacgagggctggaaagaagctgaaaga
gacttggctggttatgaatactgctggaagaattttctctctgcacaatcaatgaaagct
atcgatgctttgagaagggagttctactccttgctcagggatgctggccttgttgatagc
accacaactacctgtgattcatggagctatgatgtgcatctccttcgtgcagttatttgc
tatggcctgtaccctggaatttgttctgttgtgcacaatgaaaagtcattctctttgaaa
acaatggaggatggtcaggtgcttctgtactctaactctgtgaatgctcgggactctaag
attccgtacccatggttggttttcaatgaaaagatcaaagtgaattccgtttttctccga
gattcaacagctgtgtccgattcagtgctgctcctatttggtggaagtattttgaggggg
gatactgatgggcacttaaaaatgttaggaggttacttggagttcttcatgaaacctgcc
acagcggaaatgtaccaaagcttaaggaaagagcttgaggagttgattcaaaacaaactg
ctcaatcctaggatggttctcagtcatcacgaacttctctccgcagtaaggttactaatc
tcggaagatcaatgtgatggaagatttgtgttcaaccgtcaggtgctacaacagccatct
gtgacaacaatagcaacgcgtccggcagttgtatcaagaatagagagtggcccagggggt
gataattcaaagagccagctccaaacattgctgacgcgggcaggttatgctgcacccacc
tacaagacaaagcaactaaataacaaccagtttcgagccactgtggagtttaaggggatg
cagatcatgggtcgaccttgcaacaacaagaaacaagctgaaaaggatgcggctgctgag
gctctcgaatgtcttatggggggaacccatcgaggccatgattacgttgaaaacatgtcg
atgatgctcaagaagagcaagaaggatcataatggatga
DBGET
integrated database retrieval system
