Rhododendron vialii: 131302523
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Entry
131302523 CDS
T09330
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03020
RNA polymerase
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131302523
09124 Replication and repair
03420 Nucleotide excision repair
131302523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131302523
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131302523
Enzymes [BR:
rvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131302523
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131302523
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131302523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
131302523
NCBI-ProteinID:
XP_058185180
LinkDB
All DBs
Position
10a:complement(38474510..38485786)
Genome browser
AA seq
1840 aa
AA seq
DB search
MDDRFPYSPAEVEKVSAVQFGILSPDEIRQMSVAEIHHGETMEKGRPKVGGLSDPRLGTI
DRRMKCETCTGSMAECPGHFGHLELAIPMFHIGFMKTVLSIMRCVCFNCSKLLAEEEDHN
FKQALRIRNPKHRLKKILDACKNKAKCEGGDEIEVQNLDSEEPISKSPGGCGAQQPKITI
QGMNMIAEYKARTKKNFEREQLAEPVERKQILSAKTVLEVLSRISDEDSELLGLNPLYVR
PDWMILQVLPIPPPPVRPSVVMDGSSRSEDDLTHQLAMIIRHNENLRRQVKNGAPDHIIA
EFAQLLQFHIAAYFDNELPGQPRQATQQSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSA
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIKRLKELVGYGPYPPPGKTGAKYII
RDDGQRLDLRFLKKNSDHHLELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHKIKIMPHS
TFRLNLSVTTPYNADFDGDEMNMHVPQSLETRAEALELMMVPKCIVSPQSNRPVIGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDWKIPAPAILKPRPLWTGKQLFSLIIPKQI
NLLRYSAWHEETEKEHITPGDTRVLIEKGELLSGTLCKKTLGPSGGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQEGFSIGIGDTIADSATMKTISGTISQAKTQVRELIRLALEKK
LEAEPGRTMMESFENKVNEALNAARDAAGSSAQKSLSENNNLKAMVTAGSKGSFINISQM
IACVGQQNVEGKRIPFGFRDRTLPHFTVDDYGPESRGFVENSYLRGLTAQEFFFHAMGGR
EGIIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWVEKQ
QLDTLRMKKSDFDATFRYEFDDENWKPNYIASEYNEDLKTIPEIYNVFDAEVQKLEDDRY
QLATEIATTGDSSWALPVNIKRLIWNAQKTFKINPLECSDMHPMEIVEAVDKLQERLKVV
PGDDLISIEAQRNATLFLNILLRSTLASKRVLKEYRLTREAFEWVIGEIEARFLQSIVAP
GEMIGCVAAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVYL
KPEVNKSREKAKNIQCALEYTNLRSVTQATEVWYDPDPKSTVIEEDVDFVKSYYEMPDEE
IDPEKISPWMLRIELNREMMVDKKLSLADIAEKINLEFGDDLTCIFNDDNAEKLILRIRI
MNDEAPKEDLHDKSAEDDVFLKKIESNMLTEMALRGIPNINKVFMKEVTESKFDDKEGFE
AKKEWMLDTEGVNLLAVMGHADVDATRTRSNHLTETIEVLGIEAVRRSLLDELRVVISFD
GAYVNYRHLAILCDTMTYRGYLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVHAETD
CLKGVTENIMLGQLAPIGTGGFALYLNDEMLKQVVELQLPSHMESGMDFGMTPSLLPFIG
TPNIDGLRSPSYLLSPERDAQFSPYVGGMAFSPISSLGYSPLPPPYSPTSPVYIPTSPVY
SATSRYESASSAIYSPASPTYKPSSLGYSPAYSSDSTSYSPTSPIYTPTSLSYYSPTSPW
YSPSSPNYSSTSPNYSPASPSYNPTPPGYIPTSLAYSPTSPAYNPSSPYTLTFSPSYSPT
SPSYIPTSPSYSPTSPAYTPTSPGYSPTSPSYSPTSPSCNPSAAYSPSPEYSPTSPKLSV
YSPSSPNYSPTSPSYSLTSPSYSPTSPSYSPSSPTSSSSLHSSESADASPDYSPSSLQYS
PIVGYSPSAPGYSPASTSQYTLDMCDQEKKNNKEDGRTDM
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccggttcccgtactctccggcggaggtcgagaaagtctccgccgtccagttc
ggcatcctcagccccgacgaaatcaggcaaatgtcggtggcggaaatacatcacggcgag
accatggagaagggcaggccgaaggtaggcggcctgagcgatcctcggctcggcactatt
gataggaggatgaagtgcgagacttgcacggggagcatggctgaatgccctgggcatttt
ggccaccttgagctcgctataccaatgttccatattgggtttatgaagactgtgctgagt
atcatgcgctgtgtttgcttcaattgttccaaattactagccgaagaggaggaccacaac
ttcaagcaagcattgagaataagaaacccaaaacataggcttaagaaaattttggatgct
tgcaagaacaaagcaaaatgtgaaggtggtgatgaaattgaggtccaaaatctagattcc
gaagagccaattagtaagagtcctggtggttgtggtgctcagcaacccaagatcaccatt
caaggcatgaatatgattgcagaatacaaagctcggacaaagaaaaactttgaacgagaa
cagcttgctgaaccagtagaacggaaacaaatactttctgcaaaaactgttttagaagtt
ctgagcagaataagcgatgaagactctgaattgttaggcttgaaccccttatacgttcgt
ccagattggatgattcttcaagttcttccaatacctccacctcctgtgaggccatcagtc
gtgatggatggctcatccaggagtgaggatgatttaactcatcaactagctatgattatc
agacacaatgagaatctaaggcgacaggttaagaacggagctcctgaccacatcatcgca
gagtttgctcaactgttacagtttcacatagctgcatatttcgataatgaattgccaggg
cagccaaggcaggctacacagcaatcgggtaggcctatcaaatcgatatgcagtagactt
aagtctaaggaagggcggatcagaggtaacttgatggggaaacgggttgatttttctgcc
cggacggtgatcacaccagatccaaatattaacattgatgaactgggagtgccatggagt
attgccttgaatctcacatatccagaaactgtgaccccttataacatcaaaaggttgaag
gagcttgttggatatggaccttatcctccaccaggcaaaactggtgcgaaatatattatc
agggatgatggacaaaggcttgatcttcgtttcctgaagaaaaatagcgatcaccatctt
gaacttgggtacaaggttgagcgacacttaaatgatggagattatgtactgttcaaccga
cagcctagccttcataaaatgtctatcatgggccataagatcaagattatgccacactca
actttccgtctgaatttatctgttactacaccatacaatgctgactttgacggggatgaa
atgaacatgcatgtaccccagtcacttgagactagagctgaagcgttggagcttatgatg
gtgcctaaatgcattgtgtcaccgcagtccaatcgccctgtaattggaattgtccaggat
actctattaggatgccgcaagatcactaaaagggataccttcatagagaaggatgttttt
atgaatattttgatgtggtgggaggactttgactggaaaatacctgctccggcaattttg
aaacccaggccgctttggacaggaaaacaactttttagccttatcataccaaaacagata
aatcttctaagatattcggcctggcatgaggaaactgaaaaagaacatataactcctgga
gatactcgagttctaatagagaaaggagaactactttctggcaccctatgcaagaagaca
cttgggccgtctggtggtagtcttattcacgtaatttgggaagaggttggtccagatgca
gctcgcaaatttttgggacatacacagtggcttgttaattactggcttttacaggaaggt
tttagcatcgggattggagatacaattgctgattctgccaccatgaaaacaatcagtggg
actatatctcaagcaaaaactcaagtgagagaacttatcagacttgccctagaaaagaag
ttggaggcagaacctggacggaccatgatggaatcgtttgaaaacaaagtcaacgaggca
ttgaatgcggctcgtgatgctgctgggagtagtgcccagaagagcttatcagagaacaac
aatcttaaggcaatggttaccgcaggatctaaaggaagtttcatcaatatatcacagatg
attgcttgtgtggggcagcagaatgttgaaggtaagcgaatcccttttgggttcagagat
cggactctgccgcattttaccgtagatgattacggtccagaaagccgtgggtttgtggag
aattcatatctacgagggttgactgcacaagagttcttctttcatgctatgggtggcaga
gaaggtattatagacactgctgtgaaaacttctgaaactgggtacattcaaaggcgattg
gtgaaggctatggaggatattatggtcaaatatgatggaacagtgaggaactctttgggg
gatgtgattcagtttctctacggggaagatggtatggatgcagtgtgggtagagaaacag
cagctggatactctgagaatgaagaaatcagattttgatgctacttttcgatatgagttt
gatgatgaaaactggaagccaaattacattgcatctgaatacaacgaagatttgaaaacg
ataccagagatttataatgtgtttgatgctgaagttcagaaacttgaagacgatagatac
caacttgcgacggagattgcaaccacgggtgatagctcttgggcacttccagttaatatc
aagagattgatatggaacgcacagaagacctttaaaattaacccactggagtgttctgat
atgcatccgatggagattgtggaagctgttgacaagcttcaggagagacttaaggttgtt
cctggtgatgatttgattagtattgaagcccagaggaatgcaactctctttctcaacatc
ttgcttcgtagcacattggccagtaaaagggtgttgaaggaatacaggcttactcgggaa
gcatttgagtgggttattggtgaaatagaggctcgcttcttacagtcaatagtagcacct
ggagaaatgataggttgtgttgcggcacagtccatcggtcagccggctactcagatgact
cttaatacattccactatgctggtgttagtgccaagaatgttactcttggtgttccaagg
ttgagagagatcattaatgtagctaagaatatcaaaacgccatctctctctgtgtacctg
aagcctgaagtgaataaatcgagggaaaaggcaaagaatatccaatgtgcactggaatac
actaatctgcggagtgtcacacaagctacagaagtatggtatgatccggaccccaagagc
actgtcattgaagaggatgttgactttgttaagtcctactatgaaatgcctgatgaagag
attgatccggagaagatttcaccatggatgcttcgcatagagttgaatcgtgagatgatg
gtggacaagaagctgagtttggctgatatcgcggagaagatcaatcttgagtttggtgac
gatctgacatgcatattcaatgatgacaatgctgaaaagctaatccttcgtattcgtatc
atgaatgatgaagctccaaaagaagatttgcatgacaaatctgctgaggatgatgttttc
ctgaaaaagatagagagtaatatgttgacggaaatggctcttcgaggtataccaaatatc
aataaagttttcatgaaggaagttacagagagcaagtttgatgataaagaagggttcgag
gcaaaaaaggagtggatgctggatacagaaggtgtcaatcttttagcagttatgggtcac
gcagatgttgatgcaacaaggacaagaagcaatcacttgaccgaaactatagaagttctt
ggaatcgaggcagttcgtcgatccttgctagacgagttgagggttgttatatctttcgat
ggggcctacgtgaattacagacatctggcgatcttgtgtgacaccatgacctatcgtggt
tatttgatggctataactcgtcatgggattaatcggaacgatactggccccctgatgagg
tgttcatttgaagaaactgtggacatccttcttgatgctgcagtacatgctgaaactgac
tgcttaaagggtgttactgaaaatattatgctgggtcaacttgcacccattggaactgga
ggctttgctttgtaccttaatgatgagatgttaaaacaagttgttgagctccagctaccc
agtcatatggaatctggaatggactttgggatgactccttcccttttgccgtttattgga
acccctaatatcgacggactgaggtctccaagttatttactaagtccagagagggatgcc
cagttttctccatatgttggtggaatggccttttctcccatatcatctctcggctacagc
ccgttacctcctccatatagtcctacatctcctgtgtatattcctacatctcctgtgtat
agcgccacttctagatacgaaagcgcctcttccgcaatttacagtcctgcttccccaact
tacaaacctagttctcttgggtacagtcctgcatattcttcggatagtacatcttattct
cccacctctcccatctatacccctacctctcttagttattatagcccaacttctccttgg
tacagtccttcatctcctaactacagttcaacgtcaccaaactatagcccagcctcacca
tcatataacccaacccctccaggatacattccaacatcacttgcatacagccctacttcg
cccgcctataaccctagctctccttataccctaactttttcaccttcgtacagcccaacc
tctccttcctacattccaacttctccatcatacagtccgacgtcacctgcatataccccc
acctctcctggttatagcccaacttccccgagctacagtcctacgtctccaagttgcaat
ccctcggcagcatatagcccttctcctgaatactcaccaaccagtccaaagctgtctgtt
tacagcccttcatctccaaactacagcccaacatcaccatcatattcactaacatcacca
tcatattcaccgacttccccatcatattctccctcaagcccaacaagttccagcagcctt
catagctcggaatctgcggatgcaagtcctgactatagtcctagttctctgcagtacagt
ccaattgtggggtactcaccaagtgcacccgggtactcgccggcatctaccagccaatat
actctagatatgtgtgaccaggaaaagaagaacaacaaggaagatgggcgcactgacatg
taa
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integrated database retrieval system
