Rhododendron vialii: 131303531
Help
Entry
131303531 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131303531
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131303531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131303531
03041 Spliceosome [BR:
rvl03041
]
131303531
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131303531
Spliceosome [BR:
rvl03041
]
Complex B
Other components
Prp19-related factors
131303531
Complex C
131303531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
NRDE-2
ARM_TT21_C
ARM_TT21
POP1_C
Motif
Other DBs
NCBI-GeneID:
131303531
NCBI-ProteinID:
XP_058186411
LinkDB
All DBs
Position
10a:12950176..12953191
Genome browser
AA seq
911 aa
AA seq
DB search
MSIPQEFYPSQEDLPYEEELLRNPSSPKLWWRYLVARTDSPRAKRFTIYERALKALPGSY
KLWHAFLRERLELVRPLPVTHREYQKLNNTFERALVTMHKMPRIWVMYLLTLTEQKLVTR
TRRTFDRALCSLPATQHDRVWEPYLVFVGQKGVPIETSLRVYRRYLKHDPSHVEDFIEFL
VNSGLWQEAAERFAGVLNDDRFCSIKGKTKRRLWLELCDLLTQHAEGVSGLNVDAIIRGG
IRKSTDEVGRLWIALASYYIRRNLTEKARDVFEEGMTTVGTVRDFSEIFDVYSQFEDIML
LQKMEGEGEGNGEKDEDNDDDKDDRLDVAKIGRKLKRFWLYDDKEVELRMAQIECLLDRR
PELANSVLLRQNPHNVEQWRRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF
AKLYEDHKDVANARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNFKGALELMRRATV
EPSTEVKRRVAADGNEPVQIKLHKSLWLWAFYVDLEESLGTLESTRAVYERILNLRIATP
QILMNYAMFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRFGKSKLERARE
LFEHAVEVTPAESVKPLYLQYAKLEEDYGLAKRAMKIYDQSTKAVPPHEKLSMYEIYIAS
AAEKFGVPRTREIYKQAIESGLPDKDVKTMCMKYVELEKSLGEIDRARWVFIYASQFADP
RSDPDIWNKWSKFEVNHGNEDTFREMQRIKRSVSASYSQTHFILPEYLTRKDKQPNLDEA
MDALKKAGVPEDEMAALEKQLLPDASNTATKDSNRKVVGFVSAGVESQTEGGLKVAANHE
DIELPEESDSEDDERVDVAQKDVPPAVFGGLVRKREEGDNGDDSAATKDTDDGGHIGALE
RIKRQRQEAMV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattccgcaagagttctacccaagccaagaagacctaccctacgaagaagaactc
ctccgcaacccctccagcccgaagctatggtggcgctacctcgtcgcccgcaccgactcc
ccccgcgcgaagcgcttcaccatctacgagcgcgccctcaaggccctccccggcagctac
aagctctggcacgccttcctccgcgagcgactcgagctcgtccgccccctccccgtcacc
caccgcgagtaccagaagctgaacaacaccttcgagcgcgccctcgtcaccatgcacaag
atgccccgcatctgggtcatgtacttgctgaccctaaccgagcagaagctcgtcaccaga
acccgccgcaccttcgaccgcgctctgtgctctctgcccgcgacccagcacgatagggtt
tgggagccctacctggtcttcgttggccagaagggcgtcccgatagagacctcgcttagg
gtttatagacggtacttgaagcacgacccctcgcatgtagaggattttatcgagtttttg
gtgaattcgggcctgtggcaagaggccgcggagaggttcgccggggttttgaacgacgat
aggttttgttcgattaaggggaagactaagcgtaggctgtggcttgagttgtgtgacttg
cttacgcagcacgcggaaggggtttccgggctgaacgtggatgcgattattcggggaggg
attaggaagtctaccgatgaggtagggaggctttggatcgcgcttgcgagttattatatc
aggaggaatttgacagagaaagctagggatgtgtttgaggaggggatgactacggttggc
acggttagggattttagtgagattttcgatgtctactcgcagtttgaagatatcatgctt
ctacaaaagatggaaggagagggtgagggaaacggtgaaaaggatgaggacaacgacgat
gataaagatgaccgtttggatgtggcgaagattgggaggaagctgaagagattttggttg
tatgatgataaagaagttgaattgagaatggcccagatcgagtgtctattggataggagg
ccagaactggctaatagcgtacttcttcgccaaaacccacataatgtggagcaatggcgt
cggcgagtgaagctttttgagggtaaccctacaaagcagattctgacttacacagaggca
gtgaggacagttgatcccatgaaagctgtggggaaacctcatacactgtgggttgctttt
gccaagttgtatgaggatcacaaggatgttgccaatgcaagagtgatcttcgataaggcg
gttcaggtcaactacaaaaccgtcgataatttggctagtgtttggtgtgaatgggctgaa
atggaacttcggcataagaactttaaaggggctttggagttgatgaggcgcgcgacagta
gagccttcaacggaggtgaaacggagggtggctgccgatggtaacgaaccggtgcagatt
aagttgcataaatccttgtggctttgggcattctacgttgatttagaggaaagccttggt
accttagagtcaactcgtgcggtttatgaaaggattttgaatctgagaatcgccacgcct
cagattctaatgaactatgccatgtttttggaggaacacaaatattttgaggatgccttc
aaggtttatgaaagaggcgtcaagatttttaaatatccacatgtaaaggacatatgggtc
acgtatctttccaagtttgttaaaagatttgggaaatcaaaattggaacgtgcgcgagag
ctatttgagcatgctgttgaagtgacccccgctgaatctgtgaaaccattgtaccttcaa
tatgctaaattagaggaggattatggtctagcaaagcgagcaatgaagatttatgaccaa
tctaccaaggcggttccgccccatgagaaattgagcatgtacgagatctacatagctagt
gccgctgagaaattcggggttccaagaacaagggaaatatacaagcaagccatagaatct
ggtcttccggacaaagatgtcaagaccatgtgtatgaaatatgttgagctggagaagagc
cttggagaaatagatcgtgctcgttgggttttcatatatgcatctcagtttgcggatccg
cgatcagatcctgatatatggaacaaatggagcaagtttgaggtgaaccatggtaatgaa
gacaccttccgagaaatgcaaagaattaaaaggagtgtttctgctagttatagccagaca
catttcatccttcccgagtatctgacgcgaaaggataagcagccaaatctcgacgaagca
atggacgcactaaaaaaagccggtgttccagaagatgaaatggctgctctagagaagcaa
ttattgcctgatgccagtaacactgctaccaaagatagtaacaggaaagtagtgggtttt
gtgagcgcaggagtggagtctcagactgaaggaggattaaaagttgctgcaaatcacgag
gatattgagctaccagaagagagtgattcggaagatgatgagagagttgatgttgcacaa
aaagatgttcccccggccgtttttggtggtttagttaggaaacgggaagagggtgacaat
ggagatgatagtgctgctactaaagatacagatgatgggggccatatcggcgcgcttgag
agaataaaaagacaaaggcaagaagcaatggtttga
DBGET
integrated database retrieval system
