Rhododendron vialii: 131303855
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Entry
131303855 CDS
T09330
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rvl
Rhododendron vialii
Pathway
rvl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131303855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131303855
03036 Chromosome and associated proteins [BR:
rvl03036
]
131303855
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131303855
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131303855
PBAF complex
131303855
GBAF(ncBAF) complex
131303855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
131303855
NCBI-ProteinID:
XP_058186893
LinkDB
All DBs
Position
10a:complement(709057..712411)
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AA seq
635 aa
AA seq
DB search
MSANSNNIPENIGVSSPFGNAETGSSNLPANPTAHLQSQSQSGLGNLGGPPPPPSDFSRY
AHQYRPGPERDAAAREFARTRQIYDGYLKSKEYAESQAKAQIRAQAHAAAQAEAAHGRFR
AQLRALGMDIPPEANIAGTGSPGGSSSPMVNTPGNSSAAAQAEAIQAQFRAQLRALGMSI
PPEANISGTGSPVGSSSPMVNTPGNSSVKRAAPQKPPVRPLAVSATNTMSSPLRNMELAN
AAARKKKQKLPEKQLQERVAAILPESALYTQLLEFESRVDAALIRKKIDIQEAIKNPPSI
QKTLRIYVFNTFDNQIRTIPKKPNADPPTWTLKIVGRILEEGVDPDQAGMMQRSSSLYPK
FSSFFKRVTISLDQRLYPENHIITWDSARSPAPQEGFEVKRIGDKEFLASVRLEMSYTPE
KFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSHFHCDPPLQRVFAEKEMK
FTAVSSKISHHLSPPQPIHLEHKIKVQGNSPAGNACYDVLVDVPFPIQKELSALLANTEK
TKEVESCDEAICGAIRKIHEHRKRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEASRS
AEKERRSEFFNQTWVEDAVIRYLNRKPVADGPVST
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaatagcaataacatacctgagaatattggggtttcatccccgtttggtaat
gccgagactggttcttcgaatctgcccgcgaacccgactgcacatctccaatcgcagtcc
caatctggactaggtaacctaggaggtcccccgcccccaccgagcgacttcagtcggtat
gcgcatcaatatcgtccgggacctgagcgagatgctgctgcccgggaatttgcccgcaca
aggcaaatttacgatggatatctaaaatcaaaagaatatgccgaatcccaagccaaagca
cagatacgggctcaagctcacgcagctgcccaagctgaagcagcacatgggcgattccgg
gctcagttacgagctcttgggatggatattccccccgaggccaacattgctgggactggt
agtccgggtggttcctcttcgcccatggttaacacacctgggaattcaagtgctgctgcc
caagctgaagcaatacaggcgcaattccgggctcagttacgagctcttgggatgtctatt
ccccccgaggccaacatttctgggactggtagtccagttggttcctcttcgcccatggtt
aacacacctgggaattcaagtgtgaaacgtgctgcacctcagaagccacctgtacgcccg
cttgccgtctcagctaccaatacaatgtcgtcaccactgagaaatatggagctcgcgaat
gccgctgctcgtaaaaagaagcagaagcttcctgagaaacagttgcaagagagggtcgca
gcgattttgcctgaatctgctctttacacccagctccttgagtttgagtctcgagtggat
gctgctttgattagaaagaaaattgatatacaggaggccattaaaaaccctccctcgatt
cagaaaacgcttcggatctatgtgtttaacacttttgataatcagattcgcacaattcct
aagaagccgaatgctgacccccctacttggaccctcaagatagttggaaggattttggaa
gaaggcgtagatcctgatcaagctgggatgatgcagagatcgagttccttgtacccaaag
ttctcgtctttctttaaaagagtcaccatttccttggatcagagactgtatcctgaaaac
catatcattacatgggatagtgctcgatcgcccgcgcctcaagagggctttgaggtcaag
aggataggggataaagagtttttggctagtgtgcggttggaaatgagctatacacctgag
aaatttaagctttcaccagctttaatggaagttcttggaattgaggtcgatacccgccct
agaatcatagctgctatctggcattatgtgaaggctagaaagttgcagaacccaaatgac
ccttctcattttcattgtgatccgccgctccagagagtatttgcggaaaaagagatgaaa
ttcacagcggtatcatcgaagatatcacatcatttgtctcctccacagccaatacatttg
gagcataagatcaaggttcaagggaatagtccagctgggaatgcatgctatgatgtgttg
gtggatgttccctttccaattcagaaagaactgagtgctttattagctaacacagagaaa
accaaagaggttgaatcctgcgatgaagcaatttgtggtgctataaggaagatccacgag
catcgtaagagaagggccttctttcttggcttcagccaatctccggtggaatttattaat
gctttgattgaatctcaaagcagggatctgaagcttgtagccggggaagcaagtcgtagt
gctgaaaaagagcgtcgctcagaattcttcaatcaaacctgggttgaagatgctgttata
cgttatctgaaccgcaagccagttgcagatggccctgtaagcacatga
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