Rhododendron vialii: 131304053
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Entry
131304053 CDS
T09330
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
rvl
Rhododendron vialii
Pathway
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
131304053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131304053
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
131304053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
131304053
NCBI-ProteinID:
XP_058187135
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Position
10a:complement(34862007..34871595)
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AA seq
986 aa
AA seq
DB search
MRTRNQSKQRGQSTGKEVMAPADDSGFLESLDDGNLAAISHKAVGELLNRVNSRGSSGSK
KRDNYLQRCDFECKPVSEPEKVDEHSVGNKTKRNALEGENSKSAAVPTTPLKDTAEGKDL
HHSNLDGEEELDESFWEDGSLHTLNSVEDHKNDLFNGMTIEFDGTPDSGKRKTIRRASVE
DKELAVLVHKVHLLCLLGRGRLIDNACNNPLIQASLLSLLPKHLNRISENTNLTVNALVP
LVSWFHNNFRIRGSGSTERSFHSALAFALETQEGTAEEVAALSVALFRALNLTTRFVSIL
DVASLKPDTNKSESVSQEPRKTVRGIFQSSTLMVAKPDQVAISPVKQLSSDGKGNICETS
LRDACGAMHAKLSSNFSSSKGSQSSDLPTLSCKAGNHFSDGSLAGKSDGSKRKGDFEFEM
QLEMALSASAAETSRHSICLNADKIHSNSPNLSSPAKRLKTIKMVESPSSSQGISTAFGS
RKVGAPLYWAEIYCSGENLTGKWVHVDAVNAIIDGEHKVEPAVAACRASLRYVVAFAGLG
AKDVTRRYCMKWYKIASERVDPIWWGNVLAPLTALESGATGGVIHVERDGSNGHAKVGPF
KTTDPSSRNCTVPQNASSTGKVATEVPKEPCNKICSNSSAANSFINSRSSLEDMELETRA
LTEPLPTNQQAYKNHHLYALERWLTKYQILHPKGPILGFCSGHPVFPRTSVQLLHTKERW
LREGLQIKANELPVQVMKRSQKPSKGQASDADDDAEEACEGNTVLYGKWQTEPLCLPHAV
NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRLVPVAKRLEIDFAPAMVGFDFRNGRSIPV
YDGIVVCAEFRNAILEAYAEEEERREALEKKRNEAQAISRWYQLLSSIVTRQRLNNCYGD
HSTSQTSNNIENTKEKVSEGVGGSEDNGRSHECEGQTLPRKSEFVSMVTTEEHEHVFLTD
DHDVDEQSFMRTKRCRCGFSIQVEEF
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagaaaccagtccaagcaacggggccaatccaccggtaaagaggtgatggca
cctgcagacgattcaggatttttggaatcccttgatgatggaaatctcgcggctatatcc
cacaaggcggtaggggaacttctaaatcgggtgaattcacgtggctcgtcagggtcaaag
aagcgagataactacctccagcggtgtgattttgaatgcaaaccagttagcgaacctgag
aaggttgatgaacacagtgtgggaaataagacaaaacgaaatgccttggagggtgaaaat
tctaaaagtgctgcagtacctacaactccattgaaagacacagctgaagggaaagatctt
catcattctaatcttgatggtgaagaagaattggatgagtcgttttgggaagatggatct
ttacatactttgaattctgtagaagatcacaaaaatgatttatttaatggaatgacaata
gagttcgatgggacaccagattctggtaaacggaagacaattcgcagagcttctgttgag
gataaggaattggctgtgcttgtgcacaaggttcatttgctttgtttacttggacgggga
aggttaattgacaatgcgtgtaacaatccactcattcaggcttccttactttcccttcta
ccaaaacacttaaataggatatcagagaacacgaatttgacggttaatgctctggtgccg
cttgtcagttggtttcacaataacttccgtattagaggttcgggcagtacagagagatca
tttcattcagctttggcatttgctctagagactcaagaagggactgcagaggaggttgct
gcattgtctgtggcactatttagagctctgaatcttacaacccggtttgtgtccattctt
gatgtggcatccttgaagcctgatactaacaaatctgaatctgttagccaagagccaagg
aagactgtgagagggatctttcagtcttccacgctgatggtggctaaaccagatcaggtt
gctatttctcctgttaaacagttgtcgtcagatggcaagggcaacatctgtgaaacttcc
ttaagggatgcatgcggggctatgcatgccaagttgtctagcaatttctcctcgtccaaa
ggttctcaaagttctgatctgcccacattatcttgcaaggcaggaaatcatttctctgat
gggtcccttgctgggaaatctgatggatccaagagaaaaggggattttgaatttgagatg
cagttggaaatggctctatctgcttcagcagctgagacttctagacacagtatttgcttg
aatgcagacaaaattcatagtaattcgccaaatctctcttctcctgctaaaagattgaaa
acaattaaaatggtggaatctccatcatcttctcagggtatctctactgcatttggatca
agaaaagttggagctcctctttactgggcagaaatctactgcagtggagagaacttgaca
ggaaagtgggtgcatgttgatgctgtcaatgctattattgatggcgaacataaagtagaa
cctgcagttgctgcatgtagagcttctttgagatatgtagttgcctttgcaggccttgga
gctaaagatgtgactcgcaggtattgtatgaaatggtacaagatagcgtcagaacgagta
gatccaatttggtggggcaatgttttggcaccattgacggcgttggagtcgggagctact
ggaggtgtgattcatgtggaaagggatggttctaatggacatgccaaagtgggaccattt
aaaactactgatccttcatcccggaactgtactgtcccccaaaatgccagctcgactggg
aaggtagcgactgaagtgccaaaagagccttgtaacaaaatttgttcaaattcttctgca
gcgaattcttttattaattccaggagctctcttgaggacatggagttggaaactagggca
ttaactgagcctcttcctaccaatcaacaggcttataaaaaccatcacctttacgcgcta
gaaagatggcttacaaagtatcagatccttcatcctaaaggtcccattttgggtttctgc
tcaggtcatccagtcttcccaaggactagtgtccaattactccatacgaaagaaaggtgg
ctgcgtgaagggctgcaaatcaaagccaacgagcttcctgtacaggttatgaaacgttct
cagaaaccaagcaaaggtcaagcttctgatgctgatgatgacgctgaagaggcttgtgaa
ggaaatactgtgctttatgggaagtggcaaacagaacctttgtgtctgcctcatgcagtg
aatgggattgttcctaggaatgaacggggccaagtggatgtttggtctgagaagtgcctt
ccaccgggaactgtacacttgaggttgccgcgactagttccagttgctaagcggctagaa
attgattttgcacctgctatggttggatttgacttccgaaatggtcgctctatacctgtc
tatgatggcattgttgtttgtgctgagtttcggaatgcaattctagaggcctatgcagag
gaagaagaaagaagagaggctctagagaagaaaaggaatgaagcgcaagctatttccagg
tggtatcagcttctctcatctattgttacccgtcaaaggctgaacaactgttacggggat
cattcaacttcacaaacctcaaacaacattgaaaatacaaaagaaaaagttagtgaaggg
gttggtggtagtgaggataatggaagatctcatgaatgtgagggacagacattgcccaga
aaatcggaatttgtgtcaatggtaaccacagaagaacatgagcatgtgtttttgacagat
gatcacgatgttgatgaacagagttttatgaggacaaagcgatgtcgttgtggattttcg
attcaagtggaggagttttag
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