Rhododendron vialii: 131304394
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Entry
131304394 CDS
T09330
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131304394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131304394
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131304394
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131304394
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131304394
U7-dependent histone pre-mRNA processing factors
131304394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
131304394
NCBI-ProteinID:
XP_058187598
LinkDB
All DBs
Position
10a:13313699..13322144
Genome browser
AA seq
697 aa
AA seq
DB search
MTSTGQPQSSLKRRDSSTGTREGDQLIITPLGAGSEVGRSCVYMSYKGKIVLFDCGIHPA
YSGMAALPYFDEIDPATIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLM
LSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFSDVI
HSTVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYI
NSMNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPGGLQSGLSRQLFDKWCA
DKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSAFL
KELMPPNIILVHGEANEMGRLKQKLITLFADGNTKIISPKNCQSVEMYFNSEKMAKTIGK
LAEKVPEIGESVSGLLVKKGFTYQIMAPDDLHVFSQLSTANIIQRMTIPYSGAFGVIKYR
LQQIYESVESSTDEESGVLTLRVHDRVTVKQESDKHISVHWNADPISDMVSDSIVALVLN
VSREMPKIVEEPEPGINEEENKKKVEKISHALLVSLFGDVKQGENGKLLIRVDGNVAHLD
KQSGDVESENEGLRERVRTAFRRIQSAVKPIPISAAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaacaggacaaccccaatcgtctctgaagaggcgtgattcctcgactggaaca
agggaaggggaccagctgattataacccctttaggcgctggcagtgaagtgggtcgctcc
tgcgtctacatgtcctacaaaggcaaaatagttctgtttgactgtggaattcatcctgct
tactcggggatggctgctttgccatactttgacgaaattgatcctgctaccattgatgtg
cttcttgttacacactttcatttggatcatgctgcttcccttccttactttttggagaag
acaacattcaaagggagagtgtttatgacccatgcaacaaaggctatctataagttgatg
ttgtctgactatgtgaaagtgagcaaagtttcggttgaagatatgttgtatgatgaacaa
gacattcttcgctctatggacaaaattgaggttattgactttcatcagaccttagaagtt
aacgggatccgtttctggtgttacactgctggccacgtgcttggtgctgccatgtttatg
gtagacattgcaggtgtcagagtcctctacaccggagactactcacgcgaagaggatcgt
catctccgtgctgccgaacttccgcaattttcacctgacatttgcatcattgaatccacc
tacggcgttcagctccaccaaccacgacacatcagagagaagcgattctccgatgttatc
cactccaccgtttcccaaggtggtcgagtcctaattcccgcatttgctctcggccgtgcc
caagaacttcttttgatcctcgatgagtattggtcaaaccatccagagctccacaacatt
cctatctattatgcctccccactggcgaaaagatgcatggcggtttaccagacctacata
aattccatgaacgagaggatcaggaaccaatttgccaactcaaacccgtttgatttcaag
cacatatcgcctttgaagagtatcgagaattttaatgacgttggaccgtcggtggtgatg
gcgagtccgggtgggctccaaagtgggctatctcgacagctatttgataagtggtgtgcg
gataagaaaaatgcttgtgttattcctggatatgttgtggagggaacattagccaaaacc
atcatcaatgaacccaaagaagttaccctaatgaacggtctgacagctcctcttaatatg
caggttcactacatctccttctcagctcatgcggattacgctcagacgagtgcattcctg
aaagaactcatgccgcctaacataattcttgttcatggagaagcgaatgagatggggagg
ctaaagcagaagcttattaccttatttgccgacggaaacacaaaaattatttcccctaag
aactgccagtctgttgaaatgtacttcaactcagagaaaatggcgaagacgattggaaaa
cttgcagaaaaggtcccagaaattggtgaatcggtcagcggcttattggtgaagaagggt
ttcacttatcagatcatggcgccagatgatctccacgtcttctctcagctatccaccgcg
aacatcattcagaggatgaccatcccttactctggtgcctttggtgtgatcaaatacaga
cttcagcagatatacgagagtgtagagtcttcaacggatgaggagtctggggttttgact
ttgcgagttcacgatagagttacggtgaagcaggaatcggataagcatatctccgtgcat
tggaatgcagaccccattagcgacatggtgtctgactcgattgtggctttggtcttgaat
gtgagccgggagatgcctaaaatagttgaagagccggaacctgggataaacgaggaagaa
aacaagaagaaggttgaaaagatatcccatgctttgcttgtttccctttttggagacgtg
aagcagggagagaatggtaaattgctgataagagtagatggaaacgtggcgcatcttgat
aaacagagtggggatgtcgagagcgaaaacgaaggtcttagggaaagagtgaggacggcg
tttcggagaatccaaagtgctgtgaagccaatccccatttctgctgcttcttag
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