Rhododendron vialii: 131304395
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Entry
131304395 CDS
T09330
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131304395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131304395
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131304395
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131304395
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131304395
U7-dependent histone pre-mRNA processing factors
131304395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
131304395
NCBI-ProteinID:
XP_058187599
LinkDB
All DBs
Position
10a:13313710..13353653
Genome browser
AA seq
697 aa
AA seq
DB search
MTSTAQPQSSLKRRDSSTGTREGDQLIITPLGAGSEVGRSCVYMSYKGKTVLFDCGIHPA
YSGMAALPYFDEIDPGTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL
LSDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFTDVI
HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYI
NAMNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSALQSGLSRQLFDKWCA
DKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSAFL
KELMPPNIILVHGEANEMGRLKQKLITLFADGNTKIISPKNCQSVEMYFNSDKMAKTIGK
LAERVPEIGESVSGLLVKKGFTYQIMAPDDLHVFSQLSTANIIQRMTIPYSGALGVIKYR
LQQIYESVESSTDEESGVLTLRVHDRVTVKQESDKHISVHWNADPISDMVSDSIVALVLN
VSREMPKIVEEPEPGINEEENKKKFEKICHALLVSLFGDVKQGENGKLLISVDGNVAHLD
KQSGDVESENEGLRERVRTAFRRIQSAVKPAPLSAAS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaacagcacaaccccaatcttctctgaagaggcgtgattcctcgactggaaca
agggaaggggaccagctgattataacccctttaggcgctggcagtgaagtgggtcgctcc
tgcgtttacatgtcttacaaaggcaaaaccgttctgtttgattgtggaattcatcctgct
tactcggggatggctgctctgccatactttgacgaaattgatcctggtaccattgatgtg
cttcttgtcacacactttcatttggatcatgctgcttcccttccttactttttggagaag
acaacattcaaagggagagtgttcatgacccatgcaacaaaggctatctataagttgttg
ttgtctgactatgtgaaagtgagcaaagtttcagttgaagatatgttgtatgatgaacaa
gacattcttcgctctatggacaaaattgaggttatagactttcatcagaccttagaagtt
aacggtatccgtttctggtgttacactgctggccacgtccttggtgccgccatgtttatg
gtagacattgcaggtgtccgagtcctctacactggagactactcacgagaagaggatcgt
catcttcgtgctgccgaacttcctcaattttcacctgacatttgcatcatcgaatccaca
tacggcgttcagctccaccaaccacgacacatcagagagaagcgattcactgatgttatc
cactccaccatttcccaaggtggtcgagtcctaattcctgcatttgctcttggtcgggcc
caagaacttcttttgatcctcgatgagtattggtcaaaccatccggagctccacaacatt
cccatctattatgcctccccactggcaaaaagatgcatggcagtttaccagacctatata
aatgccatgaacgagaggatcaggaaccaatttgcaaattcaaacccgtttgatttcaag
cacatttcacctttgaagagtatcgagaattttaatgacgttggaccatcggtggtgatg
gcgagtccgagtgcgctccaaagtgggctatctcgacagctatttgataagtggtgtgca
gataagaaaaatgcttgtgttattcctggatatgttgtggagggaactttagcgaaaacc
attatcaatgaacccaaagaagttaccctgatgaacggtttgacagctcctcttaatatg
caggttcactacatctccttctcagctcacgcagattacgctcagacgagtgcattcctg
aaggaactgatgccgcctaacattattcttgttcatggagaagcgaatgagatggggagg
ctaaagcagaagcttattaccttgtttgccgacggaaacaccaaaattatttcccctaag
aactgccagtctgttgaaatgtacttcaactcggacaaaatggcgaaaacgattggaaaa
cttgcggaaagggtccctgaaattggtgaatcggtcagcggcttattggtgaagaagggt
ttcacttatcagatcatggcgccagatgatctccacgtcttctctcagctatccaccgca
aacatcattcagaggatgaccatcccatactctggtgccttaggtgtgatcaaatacaga
cttcagcagatatacgagagtgtagagtcttcaacggatgaggagtctggggttttgact
ttgcgagttcacgatagagttacggtgaagcaggaatcagataagcatatctctgtgcat
tggaatgcagaccccattagcgacatggtgtctgactcgattgtggctttggtcttgaat
gtgagccgggagatgcctaaaatagtcgaagagcctgaacctgggataaacgaggaagaa
aacaagaagaagtttgaaaagatttgccatgctttgcttgtttccctttttggagacgtg
aagcagggagagaatggtaaattgctgataagcgttgatgggaatgtggcgcatcttgat
aaacagagtggggacgttgagagtgaaaacgaaggtcttagggaaagagtgaggacagcg
ttccggagaatccaaagtgctgtgaagcctgcccccctttctgctgcttcttag
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