Rhododendron vialii: 131304554
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Entry
131304554 CDS
T09330
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
rvl
Rhododendron vialii
Pathway
rvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
131304554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131304554
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
131304554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
131304554
NCBI-ProteinID:
XP_058187807
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Position
1a:complement(48705836..48717261)
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AA seq
1296 aa
AA seq
DB search
MASRRPTNGRSPLVNQQRQITSFFTKSSSSSSSPSPSPSVLLSKQTPVTISNPKPNSNPK
RSPSPSPTTPSPLQTKQKKKKKLDKPLLLIGSSPSSHPTPDAATILYGDEVVNKRIKIYW
PLDQSWYEGSIKSFDKISRKHLIQYDDADEELLDLAKEKFEWVEEVTRRFRRLRRVSVIE
DDEGEAVTNAAEAESGSADDDSADEDWDKNGETEAAEDVLDGMDFEEEDNDVKIAKRTPA
KNSELKKRKSSGGQLGSSKKSKSALDGNGGKMVEPKDNGSGKGSHVVDDALVGDAAERFG
MRERQKLHFLGEERRDANRRRPGDVNYDPRTLYLPPDFSKSLSGGQRQWWEFKSKHMDKV
LFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSLNVEKLARKGYRVLVVE
QTETPEQLEVRRKEKGSKDKVVRREICAVVTKGTITEGETISSNPEPSYLLAVTESCRTS
ANQQERIFGICVVDVATSKIILGQFQDDPECSTLCCLLSELRPVEIIKPAKILSLETETA
LLRHTRSPLVNELVPLLEFWDAEKTVSEVKAIYRRSNEANLHDSGSSSEEAFRSLPNALS
ELVNAGYDGSYALSALGGTLFYLKQTFLDETLLRFAKFELLPCSGFSDIGQKPYMVLDAA
ALENLEIFENSRTGDPSGTLYAQLNHCVTAFGKRLLKTWLARPLYHVESIKERQDALAGL
KGVHLPFALKFRKDLSRLPDMERLLARIFASSEANGRNANKVVLYEDAGKKQLQEFISAL
RGCESMSQACSSLGVILENVESRLLHHLLTPGKGLPDVHSVLKHFQDAFDWVEANNSGRI
IPHEGVDMEYDSACRAVIELESSLKKHLKEQRNLLGDPLVTYVTIGKDAYLLEVPESLCG
RIPENYELRSSKKGFFRYWTPTIKRLIGELSQAESEKESKLKSILQRLVGRFCEHHNKWR
QYVSSIAELDVLISLAIVCDYYEGPTCQPVILGLPCPDEVPCLSAKSLGHPVIRSDSLGK
STFVPNDVTIGGSGHASFILLTGPNMGGKSTLLRQVCLAVILAQLGADVPAESFEMSPVD
RIFVRMGAKDHIMAGQSTFLTELLETASMLSSATCNSLVALDELGRGTSTSDGQAIAESV
LEHFVHKVQCRGMFSTHYHRLAVDYQEDPKVSLCHMACQVGKGVGGLEEVTFLYRLTPGA
CPKSYGVNVARLAGLPDAVLYKAAAKSQEFEGMYGKNRKGLKDKLAIQRWEVKVAGLIQD
LSKVTSNMNCHKSAETIHNRSLNELQHRARLLLKQS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccgtcgccccaccaatggccgatcgccgctggtgaaccaacaacgccaaatc
acatctttcttcaccaagtcctcctcttcatcttcatccccttccccttccccgtccgtt
cttctctccaaacaaacccctgttacaatatccaaccctaaacccaattccaaccctaaa
cgaagccctagccccagccccaccactccttcacctcttcagaccaaacaaaagaagaaa
aagaagctcgacaaacccctcctactcatcggctcatctccgtcctcccatccaacaccc
gacgccgccactatattgtacggcgatgaggtcgtcaacaagaggattaaaatttactgg
ccacttgatcagtcttggtacgaaggttcgatcaagtcttttgataaaatctcccgtaag
catctgattcagtacgacgatgccgatgaggagcttttggatctcgctaaagaaaagttt
gagtgggtggaggaagttaccagaaggttccgccggctgcgccgcgtctcggtcattgaa
gatgatgaaggagaggcggtgaccaatgcggcggaggcagaaagtggcagtgccgatgat
gattcggctgatgaagactgggataagaatggcgaaacagaagcagctgaggatgttttg
gatggtatggatttcgaggaggaagacaatgatgtgaaaatagcaaaacgaactccggcc
aagaattcagaattaaaaaagcgaaagtcaagtggagggcagttaggttctagtaagaag
agcaagagtgctttagatggcaatggaggcaaaatggtggagcccaaagataatggcagc
ggaaaggggtctcatgttgtggatgatgctttagtgggggatgcagcagaaaggtttggc
atgcgcgaaagacagaagttgcacttccttggggaagagcgtagggatgctaatagaagg
cgtcctggagatgtgaattatgatccaaggactctctacttacctcctgatttttctaag
agcttaagtggtggccagagacaatggtgggagttcaagtcaaagcatatggataaggtt
ctatttttcaagatgggcaagttttatgagcttttcgaaatggatgcacatgtaggagcg
aaagaacttgatttgcagtatatgaagggagaacagcctcattgtggatttcctgaaaag
aatttttcactgaatgtagagaagttggctcgaaagggctatcgggttcttgttgtcgag
cagacagagacccctgaacagctggaggttcgtcgcaaggagaaaggttctaaagacaag
gttgtgagacgggaaatatgtgctgtggtcacaaaaggaacaataactgagggagagaca
atttcatcgaaccctgaaccttcttacttgctggcggtgacggaaagctgtcgaacttca
gcaaaccagcaggagcgcatctttggcatttgtgtggttgatgttgctacaagcaagatt
atccttggtcagtttcaggatgatccagagtgcagtacgttgtgttgtctattgtctgaa
ttaaggccagtggaaattataaagcctgctaaaattcttagccttgaaactgagacagcg
ctgttgagacacacaagaagtcctttagttaacgaattggttccccttctggaattctgg
gatgctgagaaaactgtctccgaagtcaaggctatctacaggcgtagtaatgaagcaaat
ttgcatgatagtggatcctcttcagaggaggccttcagatccctaccaaatgcattgtca
gagcttgtgaatgcaggttatgatggaagctatgcgctttcagctcttggaggcactctt
ttctacctgaagcaaacttttctggatgaaactttgctcagatttgcaaaatttgagttg
cttccgtgctctggtttcagtgatattggtcaaaagccgtacatggtgcttgatgcagct
gcactggagaatcttgagatatttgagaatagcagaacaggagacccttcagggacatta
tatgcacagttgaaccattgtgtgacagcatttggaaagaggttactcaaaacatggctt
gcaagacctttatatcacgtggaatccattaaagaacgtcaggatgctttagcaggactc
aagggggtccatctaccttttgcacttaaatttcgaaaagatttgtccaggcttccagac
atggagcggttgttggctcgcatctttgctagtagtgaagctaatggaaggaatgcaaat
aaagtagttctatatgaggacgcaggaaagaaacagctacaggagttcatatcagctttg
cgtggctgtgaatcaatgagccaagcatgctcttcacttggtgtcattctggaaaatgtt
gaatctaggctgttacatcatttgctaactcctggtaaaggtcttcctgatgtgcattcc
gttttgaaacatttccaggatgcctttgattgggtggaagcaaacaattcagggcgtata
atacctcatgaaggggttgatatggaatacgattctgcatgtagggcagttatagagttg
gagtcgagtttgaaaaaacacttgaaggaacagcggaatttacttggagatccattggta
acttatgtaactatcggaaaggatgcataccttttggaagtccctgaaagtttatgtggg
aggattcccgagaattatgaattacggtcatccaaaaagggcttttttcggtactggact
ccaactattaagaggttgataggagagctctcacaagctgaatctgaaaaggagtctaag
ttgaaaagcatcctacagaggttggttggacgcttctgtgagcatcataataagtggaga
caatatgtttcttcaattgcagaactcgatgttttgataagcttagcaattgtgtgcgac
tattatgaaggacccacatgccagcctgttatcttagggttgccgtgtccagatgaagtg
ccttgcctctctgctaaaagtctaggccatccagttataagaagtgattctctaggcaag
agcacatttgtccccaatgatgttactattggaggttctggtcatgcaagcttcatactt
ctcactggtcctaatatgggcggaaagtccactcttctgcgccaagtttgcttggctgta
attttagcccagctaggagcggatgtccctgcagaaagctttgaaatgtcacctgtcgac
cggatctttgttaggatgggtgcaaaagatcatattatggctggccaaagcacatttctg
acagagcttctggagacagcatctatgctgtcatctgctacctgcaattcacttgtggcg
ttggatgaacttggacgcgggacatctacttcagatgggcaagccattgcggagtcggta
cttgaacatttcgtccacaaggtgcagtgtcgaggaatgttttcaactcactatcatcga
ttagctgtagactatcaggaggaccccaaagtctccctatgccatatggcatgccaagtt
ggaaaaggagtaggaggtctggaagaagttacctttctttacaggttgacacctggtgct
tgccctaaaagctatggcgtcaatgttgcgcggctagctggacttcccgatgctgtactt
tacaaagctgctgccaagtctcaagagtttgaaggaatgtatggcaaaaacaggaaaggg
ttgaaggacaaattggctattcaacgttgggaagtcaaagtagccggtcttatccaagat
ttaagtaaagtcacatcgaatatgaattgccacaagtctgctgagacaatacataacaga
tcactgaatgaactgcagcatagagcaaggctgcttctgaagcaaagctag
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