Rhododendron vialii: 131304671
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Entry
131304671 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131304671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131304671
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131304671
Spliceosome [BR:
rvl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131304671
Complex B
131304671
Complex C
U2 SnRNP specific factors
131304671
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
HEM4
Med7
Motif
Other DBs
NCBI-GeneID:
131304671
NCBI-ProteinID:
XP_058187993
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All DBs
Position
1a:48771517..48776603
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AA seq
782 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQPPQRLYVPPPSSRSSAGHDNYEDTDVDHIEYDDDN
NRDDNDVAQNNKDGDNDDEIDPLDAFMEGIQEEMRAVQPPKPPKQNKYRDDEEEEDDPME
SFLRAKKDVGLTLAYEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPILLDKRKIEPIP
PLDHTSVDYEAFNKDFYEEKPSISGMSEQDVVEYKKSLAIRVSGFDVPRPIKTFEECGFS
ADLMKTIAKQAYEKPTAIQCQALPIVLSGRDIIGMAKTGSGKTAAFVLPMIVHIMDQPEL
EKDEGPIGVICAPTRELAHQIYLEAKKFAKSHSIRVSAVYGGMSKLEQFKELKAGCEIVV
ATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVIPSDAEKMSWLIEKLPGLIDNGDV
LVFASKKATVDEIQSQLDQRGFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARG
LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVAA
GQNASAELMDLAMKDGRFRSKRDARKGGGKKARGRGGSGSRGVRGVDYGLGIGYSVDSTN
TSSSTAPSRSAAVSSQRTGMTQFKSKFVAASSNSQYQGLSNSLGTNANKRTPLRGFVSGG
SIGGDVNAAWATNLSTPAAAPPMSGGHPICQSSREDASHKNSESSRDRPKERRRRSGWDQ
DQ
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaggaagttcggattcgaaggcttcggcatcaaccgccaacaaacttacaat
ttcgagcgctcccaacctccacagaggctctacgtcccaccaccttcttcccgctcctcc
gccggccacgacaactacgaagacactgacgtagaccacatcgaatacgacgacgacaac
aaccgagacgacaacgacgtcgcccaaaacaacaaggatggcgacaacgacgacgaaatt
gaccctctcgacgccttcatggaggggattcaggaggagatgagggcggttcagcctccc
aagccgccaaaacagaacaagtatagggacgatgaagaggaggaggatgatcccatggag
agtttcctcagggccaagaaggatgtagggttgacgctggcgtacgaggctcttcacgct
gggtacgattcggatgaggaggtttatgctgctgctaaggcggtcgatgccggaatggtc
gagtacgattctgatgacaatcccattttgcttgacaagaggaagattgagcctattccc
cctttggatcatacttcggtggactatgaggccttcaataaggatttttacgaggagaaa
ccttctatatcaggtatgagtgagcaggatgttgttgaatacaagaagagcttggctatt
cgtgtttctggttttgacgtaccgaggccaattaagacatttgaagagtgtggattttct
gcggatttgatgaaaactattgcaaaacaagcgtatgaaaagcccacagcaatacagtgc
caagcgttaccaattgtgctatctgggagagacatcattggtatggcaaaaactggctcg
ggaaaaactgctgcttttgtgcttcctatgattgtccatattatggatcagcctgaactt
gagaaagatgaaggtcctattggggtgatatgtgcacctactagagaactagcgcaccaa
atatacttggaggcaaagaaatttgcaaaatcacacagtatacgtgtctccgcagtctat
ggtggaatgtccaagctcgaacaattcaaagagctaaaagcaggatgcgagatagttgtt
gctactcctggcagattgatagacatgctaaaaatgaaggcactgacaatgttcagagct
acttacctagtgcttgatgaggctgataggatgtttgaccttggatttgagccacaaata
agatccatcgttggtcagattaggccagaccgtcaaaccctactgttttcagcaacaatg
ccccgcaaagttgaaaagttggccagggaaattctcaccgatcctgtcagagttactgtg
ggagaggtgggaatggccaatgaggatattactcaagttgttcatgtaattccttctgat
gccgagaagatgtcttggcttattgaaaaactacctggactcattgacaatggtgatgtt
ctagtttttgcttcgaaaaaagctacagtggatgagattcaatcacagctggatcagagg
gggtttaaagttgcagctcttcatggtgacaaagaccaggcttctcgtatggatatactg
caaaagtttaaatctggaatataccatgttcttattgcgacagatgttgctgctcgtggt
cttgacatcaaatcgattaagtcagtagtcaactttgatatagctagggacatggacatg
catgtccatcgaataggaagaaccggccgtgctggtgacaaagatggaacagcatatact
cttatcacacagaaagaggctaggtttgcaggcgaattggttaacagtttagttgctgct
ggtcaaaatgcgtcggcggaactgatggatcttgctatgaaggatgggagattcagatcc
aagcgtgatgcaaggaaaggaggtggaaaaaaggctagaggaaggggtggaagtggcagt
cgaggcgtgcgtggtgtggattacggtttgggtattggatacagtgtagactccactaat
acttcatctagcactgccccaagtcgctctgctgctgttagttcacagagaactggaatg
acacagtttaaaagcaaatttgtggctgcttcatctaattctcaatatcagggcttgagt
aacagtttaggcaccaatgccaacaagagaacaccgttacgaggttttgtttctggtggc
tcaataggtggtgatgtaaatgctgcttgggcgaccaatttgtcgactcctgctgctgct
cctcccatgtcaggagggcaccctatttgtcagagctccagggaagatgcaagtcataag
aactcagaaagttccagagatagacctaaggaaaggcgcagacgctctggttgggaccag
gatcaataa
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