KEGG   Rhododendron vialii: 131304811
Entry
131304811         CDS       T09330                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
rvl  Rhododendron vialii
Pathway
rvl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    131304811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rvl03019]
    131304811
   03036 Chromosome and associated proteins [BR:rvl03036]
    131304811
Messenger RNA biogenesis [BR:rvl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     131304811
Chromosome and associated proteins [BR:rvl03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     131304811
    COMPASS/SET1 complex (yeast)
     131304811
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_SPT8 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_Nup120_160 NBCH_WD40 WD_LRWD1 Beta-prop_SCAP Methyltransf_13
Other DBs
NCBI-GeneID: 131304811
NCBI-ProteinID: XP_058188190
LinkDB
Position
10a:complement(1855225..1861295)
AA seq 337 aa
MMMTSSLAELDDETVRSMSIGAVFSDFVGKINSLDFHRTADLLITASEDDSVRLYDIANA
KLLKTTYHKKHGADRICFTHHPSSVVCSSRYNLDTTGESLRYLSMYDNRCLRYFKGHKER
VVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGG
AIKLFDSRSYDKGPFDTFLVGGDMAEVCDIKFSNDGKSMLLTTTSNNIYVLDAYGGEKRC
GFSLDPSPNTTIEATFTPDGQYVLSGSGDGSLHAWSIGKRTKVGSWDSHIGVASCLKWAP
RRAMFVAASSVLTFWIPNNNSNSKSSTEVGTMDPDAR
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgatgatgacgtcgtcgctcgcagagctcgacgacgagactgttcgcagcatgtcaatc
ggtgccgttttttctgatttcgttggaaagataaattcactggacttccatcgcactgct
gatttgctgattacagccagcgaggatgattcggtgcgactatacgacattgcaaatgca
aaattgctgaagaccacatatcataagaagcatggtgctgatcgtatatgttttacccat
cacccaagttctgttgtttgctcttcgagatacaatttggatacaactggagaatcactg
cgatatctctccatgtatgacaatcggtgccttcgttactttaaagggcataaagaaagg
gtggtttctctgtgcatgtctccagttaatgacagctttatgtctggttctcttgaccat
agtgtcagaatatgggatctgcgtgttaatgcctgccagggaattctacgtctacggggt
aggccaacagttgcgtatgaccaacaaggcctcgtatttgcagtggcaatggaagggggt
gccatcaaattgtttgactcgaggtcgtatgacaagggcccttttgatacctttttagtt
ggtggagacatggctgaggtctgtgatattaagttcagcaatgatggcaagtcaatgctt
ttaacgacaacgagcaataatatttacgttcttgatgcatatggaggagagaagcgctgt
gggttcagtttggatccatctccaaatacaacgatagaggcaacttttacaccagatggc
cagtatgtgctttcaggatcaggagatgggagcttacatgcctggagcatcggcaaacgg
actaaggtgggaagctgggacagtcatataggcgttgcatcctgcttgaagtgggcacct
cgtcgggcaatgtttgttgctgcatcttcagttctcacgttttggatacctaataacaac
tccaactcaaaatcatcgactgaagtcggaactatggaccctgatgcccgatga

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