Rhododendron vialii: 131304822
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Entry
131304822 CDS
T09330
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131304822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131304822
03009 Ribosome biogenesis [BR:
rvl03009
]
131304822
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131304822
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131304822
Complex B
131304822
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131304822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
131304822
NCBI-ProteinID:
XP_058188213
LinkDB
All DBs
Position
10a:complement(1970839..1978401)
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AA seq
663 aa
AA seq
DB search
MATATVSSAGPRYAPADPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPKAPTPPTQSV
SAPLEKPSTPPLSASVQVQQSSQGQPCDSNCSDDGDRNSRASNGASQLASGTTSYQSGKV
DSVNGGNESAESYRRRHEITVTGRNVPAPFTSFDATGLPSELLREVRQAGFSAPTPIQAQ
SWPIALQNLDIVAVAKTGSGKTLGYLIPGFFHLKRRRNNPQMGPTVLVLSPTRELATQIQ
DEAVKFGKSSQISCTCLYGGAPKGPQLSQLSRGADIVVATPGRLNDILEMKKVSLHQVSY
LVLDEADRMLDMGFEPQIRKIVKEVPTKRQTLMYTATWPKEVRKIAADLLVNPVQVNIGN
VDELVANKSITQYVEVLPHMEKHKRLEQILRSQEPGSKIIIFCSTKKMCDQLARNLTRQF
GAAAIHGDKSQADRDMVLSQFRSGRCPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYV
HRIGRTGRAGATGEAYTFFGDQDAKHASDLIKILEGANQNVPAELRDMTSRGGGMGRPMR
RWASSSGGYDAGHGGRSDSGGYGGRGYGSHGSDDSDRYANNAKDDGDGPGGYQPTMSFHE
RMLLQAGNSGQASNRSKSPDNKGSGWGDNPSRARSRSRSPERFDKAPPARSFHEQMMAQA
RSN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcaactgtctcttctgctggtccacgttatgctcctgcggatcccactctt
cccaagccttggagaggtcttgttgatggtaaaacaggttatctttacttctggaatcca
gagaccaatgtcacccagtacgagaggccaaaggcccctacgccccctacgcagtctgtc
tcagctccactagagaagccgtctactccgcctttaagtgcttctgttcaagttcagcaa
tcttctcaaggacaaccttgcgacagtaattgtagtgatgatggcgatagaaatagcaga
gctagcaatggtgcttcacagcttgcttctggaacaacaagttatcagagtgggaaagtc
gactctgtcaatggcgggaacgagtctgcagagtcttatcggcgtcggcatgaaataact
gttactggacgtaatgtgccggctcccttcacttcatttgatgcgactggtttaccttca
gagctacttagagaggtacgccaagctgggttctccgcacctactcctatacaggcgcag
tcatggccgattgctcttcaaaatcttgacattgtagctgttgccaagacaggttcgggt
aaaacgttgggttacttgattccaggattttttcatctcaagcgccggcgtaataatcct
cagatgggtccaactgttttggttttgtcaccaacgagagagttggccacacagatacag
gatgaggctgtgaagtttggaaagtcatcacaaatatcttgcacttgtttgtatggagga
gcaccaaagggaccccaattaagtcaattaagcagaggtgcagatattgtggttgccact
cctggtcgtttgaatgatattttagagatgaaaaaagtaagcctccatcaagtctcttac
ttggtgttagatgaggcggaccgcatgctggacatgggtttcgaaccacagatccggaaa
attgtgaaggaggtgcctactaaacgccagaccctcatgtacactgcgacatggcccaaa
gaggttcgcaaaatagctgcagatctactggtcaatcctgttcaggttaacattggaaat
gtggacgaacttgttgccaacaagtctatcacccagtatgttgaagtattgccacacatg
gagaaacacaagcggcttgagcagatactgcggtcccaagaaccaggatctaagattata
atcttttgttcaactaagaagatgtgtgatcaacttgctcgtaatctgacccgtcagttt
ggagctgctgccattcatggagataagtctcaggctgatagagatatggtgttgagccag
tttcgcagtggaaggtgtccagtgcttgttgccactgacgttgcagctcgcggtttggat
gtcaaagatatcagggtggttgtcaattacgatttccctactggagtagaggattatgtg
cacaggattggaaggactgggagggcaggtgccactggagaggcttacaccttttttggg
gaccaagatgcaaagcatgcttcagatctcataaaaattttagaaggagcaaaccagaat
gttccagcggagcttcgtgatatgacttcacgcggtggtggaatgggcaggccaatgcgt
cgatgggcttccagctccggtggatatgatgcaggccatggtggacggagtgactcgggg
ggatatggtggaaggggatatggcagccatggttctgatgacagtgacaggtatgccaac
aatgctaaggatgatggggatggtcctgggggttatcagccgacgatgagcttccatgaa
agaatgctgcttcaagctggaaacagtggtcaagctagcaacagaagtaaaagtccagac
aacaagggttcaggatggggtgacaaccctagcagggctagaagccgtagccgtagccca
gagaggtttgacaaggctccaccagcgcgcagttttcatgaacaaatgatggcgcaagct
cgatcaaactaa
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