Rhododendron vialii: 131306358
Help
Entry
131306358 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131306358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131306358
03041 Spliceosome [BR:
rvl03041
]
131306358
03009 Ribosome biogenesis [BR:
rvl03009
]
131306358
03016 Transfer RNA biogenesis [BR:
rvl03016
]
131306358
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131306358
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131306358
Spliceosome [BR:
rvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131306358
Complex C
U4/U6.U5 tri-SnRNP related factors
131306358
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131306358
Transfer RNA biogenesis [BR:
rvl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131306358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
131306358
NCBI-ProteinID:
XP_058188535
LinkDB
All DBs
Position
11a:complement(29214480..29224905)
Genome browser
AA seq
994 aa
AA seq
DB search
MGSMKRKSLEDPSEEQPGPPSKQQRENNGSAVSDEPVACVHDVSYPEGYVPRSNPSSVEG
DSKPAKEFPFTLDPFQSEAIKCLDSGESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIVREVAW
VIFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALNALLPASEGDRKKENGKWQKG
LVLGKAGEESDIFKMVKMIIMRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKANIES
IFWSAMDMLSDDDKKLPQVSNMLPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDEK
LEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEDGDPENLLRNSFYQFQADRAIPDLE
KQAKDLEKERDSIVLEEEDSLENYYSLLEQYKSLKKDVRGIVLAPRYCLPFLQPGRLVSH
QCTKSNESSPSFSIEDQVTWGVIINFERVKGLSEDDANRKPEDANYTVDVLTRCAVRRDE
VGKKTIKIVPLKEPGEPAVVSVPISQIDSFSSVRLLIPKDLLPLESRENTLKKVSEVLSR
FAKEGMPLLDPEEDMKVQSSSYRKAVRRIEALESLFEKHEIAKSPLIEQKLKVLHMKKEL
TAKIKLIKRTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSADELTL
TELMFNGVFKDIKVEELVALLSCFVWQEKLKDAQKPRDDLELLFTQLQDTARRVAKVQLE
CKVQIDVEKFVSSFRPDIMEAVYAWAKGSKFYEIMEITEVFEGSLIRAIRRLEEVLQQLI
QAAKSIGEAELEAKFEDAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggatcaatgaagaggaaatcactagaagacccatccgaggaacaacctggccctcca
tccaaacagcagagagagaataatggttcagccgtttccgatgagcctgtggcatgtgtg
cacgacgtgtcgtatccagagggttatgttcctcgatcaaatccctcgtcagttgaaggt
gattccaaaccggccaaggagtttcctttcacgctcgacccttttcagtccgaagctatc
aagtgccttgatagtggtgaatccgtcatggtatcagctcatacatcagctgggaaaaca
gtagttgcactgtatgcaattgcaatgtcattgcagaacaagcagcgggtaatatatact
tcaccaatcaaagcgttgagcaaccagaaatatagggagttcaaggaagagttttcagat
gtgggtttgatgactggagatgtcaccattgagccaaatgcatcttgcttggtgatgact
acagaaatctggcgcagcatgcagtacaaaggatcggagattgttcgtgaagtggcatgg
gttatttttgatgaagtacattacatgcgtgatagggaacgaggtgtggtatgggaagag
agtattgttatggccccaaagaaatctcgatttgtatttctctcggcaactgtacctaat
gcgaaggagttcgcagattgggttgcaaaggtccaccagcaaccatgtcatattgtttac
actgattatcgaccaacaccgcttcagcattatatttttccctcgggaggcaatggactt
tacttggtggtagatgagaaaggaaaatttcgggaggacagctttcaaaaagctttaaat
gctcttcttcctgccagtgaaggtgacaggaagaaggagaatgggaaatggcagaagggt
ttggtgcttggtaaggctggtgaagaaagtgacattttcaagatggtgaaaatgatcatt
atgcgtcaatatgaccctgtgatacttttcagctttagcaaaagggaatgtgaatttctt
gccatgcagatggcgaaaatggatctgaatgaggatgatgagaaagcaaacattgaaagt
atcttttggagtgcaatggacatgttatcagatgatgataagaagctacctcaggtttcg
aatatgctccccattttgaaacgtggaataggtgtgcatcattctggcttgcttcccata
ctgaaggaagtcattgagatactattccaagaagggctcatcaagtgcttgtttgccaca
gagactttcagcataggtttgaatatgcctgcaaaaactgttgtcttctcaaatgttcgt
aagtttgatggagataagtttagatggttatccagtggagagtatatacagatgagtgga
cgtgctggtcgtagaggaattgatgaacgtgggatatgcattctcatggtggatgaaaag
ctggaaccttctactgctaaaatgatgctgaaaggaagtgctgatagtttaaacagtgcc
ttccatttaagctacaacatgcttttgaatcaaatccgttgtgaagatggtgaccccgaa
aatctgctccgtaattcattctatcaatttcaggctgatcgagccattcctgatcttgag
aaacaagcaaaagaccttgaaaaagagagggattcaattgtactagaagaagaggatagc
ttggagaattattactctctccttgagcaatacaaaagcttgaaaaaggatgtccgtggt
attgtgcttgctccgagatattgtttaccctttttgcagcctggaaggcttgtgtcccat
caatgcacaaagagtaacgaaagttccccttctttctccatagaggaccaagtcacatgg
ggtgtgattatcaattttgaaagggtgaaaggtctttctgaagatgatgcaaataggaaa
ccggaggatgccaactacacagttgacgtgcttacaagatgtgctgtgcgtagggatgaa
gttggaaaaaagacaattaagattgttcccttgaaggagcccggagaacctgctgttgta
tctgttcctatctcacagattgacagcttcagtagtgtgcgtctactcataccaaaggat
ctgttgccattggaatctcgagaaaataccctaaagaaagtgtcagaagtgctctctaga
tttgcaaaagaaggaatgccccttttggatcctgaagaagacatgaaagtccaaagtagc
tcatacaggaaggctgttcgcaggatagaggctttagagagcctgtttgaaaagcatgaa
attgcaaaatctccccttattgagcaaaagcttaaagttctacacatgaagaaagaactt
acagccaaaatcaaattaatcaagaggacaatgcgttcttccacggcattggctttcaaa
gatgaactgaaagcaaggaaaagggttctcaggagactgggttatgttacaagtgatgat
gttgtggagttgaagggaaaggttgcttgtgaaatcagtagcgcagatgaattaaccttg
acagaactcatgtttaatggggtatttaaggacataaaggtggaagagttggtggcactt
ctttcttgttttgtctggcaagagaagcttaaggatgctcaaaagcccagggatgatctt
gagttgctctttacacaattacaagatactgccagaagggttgccaaagttcagcttgag
tgcaaggttcaaattgatgtggagaaatttgtaagctctttccgacctgatataatggag
gccgtgtatgcttgggcgaaaggttcaaaattctatgaaattatggaaatcactgaagtt
ttcgagggcagcttgatcagggctatcaggagattagaagaagttcttcagcagctaata
caggcagccaagtccataggagaagctgagctcgaagcaaaattcgaggatgctgtttca
aagattaagagggacattgtctttgcggcatctctttacttgtaa
DBGET
integrated database retrieval system
