Rhododendron vialii: 131306454
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Entry
131306454 CDS
T09330
Name
(RefSeq) phytochrome A isoform X1
KO
K12120
phytochrome A
Organism
rvl
Rhododendron vialii
Pathway
rvl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131306454
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
UPF0270
PAS_10
Motif
Other DBs
NCBI-GeneID:
131306454
NCBI-ProteinID:
XP_058188683
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Position
11a:27908239..27915379
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AA seq
1138 aa
AA seq
DB search
MSSSRPSQSSASSGRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTGTVSGDIQ
PRSDRVTTAYLHQIQKGKLIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDH
PVLGIGTDVRTIFTNPSAAALQKAMGYGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSIKRLCDTMVQEVFELTGYDRVM
VYKFHDDDHGEVFSEVTKPGLEPYLGLHYPAIDIPQAARFLFMKNKVRMICDCNAKHVKV
IQDDKLPFDLTLCGSALRAPHSCHLQYMENMNSIASLVMSVVVNEGDEEGEGEGERSDPA
NQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQ
TLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAVLLYKNKIYRMGATPTDLQLRDIVSWLSE
YHTDSTGLSTDSLHDAGYPGALALGDGVCGMAAVRITPNDMLFWFRAHTAAEIRWGGAKH
EPGERDDGRKMHPRSSFEAFLEVVKTRSLSWKDFEMDAIHSLQLILRNAFKDTDVMDTTT
DTIHSRLQDLKIEGMQELEAVTTEMVRLIETATVPILAVDVDGLVNGWNLKIAELTGLPV
DRAIGRHLLSLVEDSSAGIVKKMLDSALQGKEEQNIQFEIKTHESRSDSGPISLVVNACA
SRDLRENVVGVCFVAQDITGHKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGADEFGWCSE
WNPAMAKISGWSREYVINKMLLGEVFGTHTACCRLKNQEAFVNLGIILNNAVTGHESEKI
SFGFFAQSGKYVECILCVSKKIDGEGAVTGVFCFLQLASPELQQALHVQRLTEQTALKRL
KALAYIRRQIRTSLSGIMYSRKLMEGTDLGERQIQLLHTSAQCQRQLNKILDDTDLDCII
DGYDSPILYNQYLDLEMVEFTLHEVLVASISQVMMQSNGKGIHIADDLQEEIMSETLYGD
SLRLQQVLADFLSISVSCTPNGGQLGVAASLTKDRLGQSVQLVHLEFRITHVGGGVPEAL
LSQMFGGDTDTSEEGISLLVSRKLVKLMNGDVQYLREAGKSTFIISVELAGANKPKGE
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttcaagacccagccaatcttcagccagttcagggcgatccaaacacagtgct
agaatcatagctcagaccactgtggatgcaaagctccatgcagattttgaggagtcgggt
agctctttcgactactcatcttctgtccgttttactggaacagttagtggagacatacaa
cctaggtctgacagagttaccacggcttacctccaccaaatccagaaaggcaagctgatc
caacccttcgggtgcttattggctctcgatgaaaaaactttcagagtgattgcttatagt
gaaaatgctcctgaaatgctgacaatggttagtcacgcagtcccaagtgttggggaccac
ccggttctaggcattggaactgacgtgagaactatcttcactaatccaagtgcagctgct
ttgcaaaaggctatgggatatggagaggtttcccttctaaatcccatcttggttcattgc
aaaacttccgggaaacccttttatgcaattgttcatagggtaactggtagtttgatcatt
gactttgagcctgttaagcctcatgaggttcccatgactgccgctggggccctccaatcg
tacaagctagcagctaaagccattacccgcttgcagtctttgcccagtgggagcataaaa
aggctttgtgatactatggttcaagaagtttttgaactcactggttatgatagggtgatg
gtttataaatttcatgatgatgatcatggggaggttttttccgaggtaacaaaaccaggg
cttgaaccctatttgggtttacattatccggcaatagatatccctcaggctgctcgcttt
ttattcatgaagaataaggtgcgtatgatctgtgattgtaacgcgaaacacgtgaaggtg
attcaagatgataagcttccttttgatctgaccttgtgtggttcggccctcagggcccca
cacagttgccatttacagtatatggagaacatgaactccattgcttctctggttatgtcg
gttgtggtcaatgaaggggatgaagagggagaaggagaaggagagcgctctgatccggca
aaccaacaaaagagaaagaggctttggggtttagtcgtgtgccataacaccactccgagg
tttgtccctttccctcttcggtatgcgtgtgaatttcttgctcaagttttcgctattcat
gtcaacaaggagttagaattggaaaatcagattcttgaaaagaacatccttcgtactcaa
acactattgtgtgatatgctgatgcgagatgcacccctaggcatagtgtcacagagtcca
aacgtaatggaccttgtgaaatgtgatggagccgtgttactgtacaaaaataaaatatac
agaatgggagcaaccccaaccgacttgcaattacgtgacatagtctcctggctctctgag
tatcatacggattccacagggttgagtactgatagtttgcatgatgctgggtacccgggg
gctcttgctcttggtgatggagtatgtggaatggcagctgtcaggataaccccaaacgac
atgcttttctggttcagggcccacactgctgcagaaatccgatggggtggagccaaacat
gaaccaggtgagagggatgatggaaggaagatgcaccccagatcgtcatttgaagctttc
cttgaagtcgttaaaactagaagtttgtcatggaaggactttgagatggatgcgatccat
tcgttgcagcttatcttgaggaatgcatttaaagataccgatgtgatggatacaaccaca
gacactatccattcaaggcttcaagacctcaaaattgaaggaatgcaggaacttgaagcg
gtaactactgagatggtccgtctgattgaaacagctacagtaccaatattggcggttgat
gttgatggactggtaaatggatggaatttgaaaattgcagagttaactggtcttccggtt
gatagagcaatcggaaggcatttactgtcgcttgtggaggattcttctgctggtatagtg
aagaagatgttggactcggcattgcagggcaaagaggagcaaaatatccaatttgagatc
aaaacccacgagtctaggagtgactctggtcccatcagcttagttgtgaatgcttgtgca
agtagggaccttcgcgagaatgttgtgggggtctgttttgtggcacaagatattactggg
cacaagactgttatggacaagttcacccgaatcgaaggtgattacaaggctattgtacag
aacccaaaccccttgattccccccatatttggcgcggatgaatttggctggtgtagcgag
tggaacccagctatggcaaagatatctgggtggagtagggaatatgttattaataagatg
cttctgggagaggtttttgggacacacacggcatgttgtcgtctcaagaatcaagaggct
ttcgtaaaccttggtatcatactgaacaatgctgtgactggtcacgaatcagaaaagatt
tcttttggtttctttgcacagagtgggaagtatgtagagtgcattttgtgtgtgagcaag
aagatagatggagagggtgctgtcactggggtcttttgctttttgcagctagcaagtcca
gagttgcaacaagctcttcatgttcagagattaacggaacaaactgcactgaagagacta
aaagcattggcttacattagaagacagatcaggacttccctctcggggattatgtattct
cggaagctgatggagggaacagatttgggagagcgtcagatacaactacttcatactagt
gctcagtgccagcgtcagttgaataaaattcttgacgatacagatcttgattgcatcatt
gacgggtatgacagccctattctctacaatcagtatttggatcttgaaatggttgagttt
acattgcatgaagttttggttgcatcgattagtcaagtaatgatgcagagcaatggaaag
ggaatccacattgcagatgatttgcaagaggagatcatgtctgaaaccctatacggggat
agcctgaggcttcaacaggtcctagcagatttcttgtcaatatcagtgagttgtacaccc
aacggtggccagcttggtgttgctgctagcttgaccaaagatcgtttaggacaatctgtt
cagcttgtgcatttggagttcaggataacacatgtgggaggaggtgtgccagaagccttg
ttgagccagatgtttggcggcgatacagacacatctgaggaggggatcagcctactagtc
agcagaaaactggtgaagctcatgaatggagatgttcagtatctgagggaagctgggaag
tcaactttcatcatatctgttgaacttgctggagccaataagcctaagggtgaataa
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