KEGG   Rhododendron vialii: 131307296
Entry
131307296         CDS       T09330                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
rvl  Rhododendron vialii
Pathway
rvl03030  DNA replication
rvl03410  Base excision repair
rvl03420  Nucleotide excision repair
rvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131307296
   03410 Base excision repair
    131307296
   03420 Nucleotide excision repair
    131307296
   03430 Mismatch repair
    131307296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rvl03032]
    131307296
   03036 Chromosome and associated proteins [BR:rvl03036]
    131307296
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131307296
DNA replication proteins [BR:rvl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131307296
  DNA Replication Termination Factors
   ELG1-RFC complex
    131307296
Chromosome and associated proteins [BR:rvl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131307296
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131307296
  Check point factors
   HRAD17(Rad24)-RFC complex
    131307296
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_16 RCF1-5-like_lid AAA_22 AAA_11 DUF815 AAA_14 ATPase_2 AAA_30 AAA_5 AAA_7 RuvB_N DNAX_ATPase_lid AAA_24 AAA_3 ResIII AAA_19 DUF3086 bpMoxR nSTAND3 SLFN-g3_helicase AAA_2 TIP49 AAA_28 ABC_tran Mg_chelatase AAA_25 AAA_18
Other DBs
NCBI-GeneID: 131307296
NCBI-ProteinID: XP_058189699
LinkDB
Position
11a:22967360..22974593
AA seq 359 aa
MAEGVTIMDIDDDSSLKQSYNKGKNVDAPTDTKATPWVEKYRPQSLADVAAHRDIVDTID
RLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGTQMHNMVLELNASDERGIDVVRQQIQ
DFASTQSFSFGPKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIP
ALQSRCTRFRFAPLDAIHVSERLKHVIRAEGLDVTEGGLAALVRLCNGDMRKALNILQST
HMASQQQITEEAVYLCTGNPLPKDIEQISHWLLNEAFTVSFRRISELKTRKGLALVDIAR
EVTMFVFRIKMPPDVRVQLINDLADIEYRLSFGCNDKLQLGSLISTFTQARAALVAAAK
NT seq 1080 nt   +upstreamnt  +downstreamnt
atggcggagggggtcactataatggacatcgacgacgacagctccctcaaacagagctac
aacaagggcaaaaacgtggacgcaccaaccgacaccaaagccactccttgggtcgaaaag
taccgcccccagtccctcgccgacgtcgccgcccatcgcgacatcgtcgacaccattgat
aggcttactagcgagaacaaattgccgcatttgttactgtacgggcctcccgggacgggc
aagacgtcgacgattcttgcggtggcccggaaactgtacgggacgcagatgcacaacatg
gtcttggagctgaatgcgtcagacgaacgcgggattgatgttgttaggcagcagattcag
gattttgctagcactcagagcttctcttttggaccaaaatcatcagtgaagttggtctta
ttggacgaggcagatgccatgacaaaggatgctcaatttgccctgcgtcgagtgattgag
aagtatacaaaaaacactaggtttgctcttatctgtaatcatgtcaacaagataattcca
gctctgcaatcaagatgtactcgatttcgttttgctcctcttgatgccattcatgtttct
gagcgacttaaacatgttattcgtgctgaagggctcgatgtaaccgagggtggtttggca
gctcttgtccgactttgcaatggtgacatgagaaaggctttgaacattttgcagtctaca
catatggcttcccagcagcagataacagaagaagctgtctacttgtgcactggaaatcca
ttgccgaaagacattgagcaaatatcacactggcttctgaatgaagcattcacagttagt
tttagacgaatatctgaattgaagacaagaaaaggattagctttggtggatattgcacga
gaagtaaccatgtttgtctttaggatcaagatgccaccagatgttcgtgttcaactaatc
aatgacttggctgatattgaatacaggttgagttttggatgcaatgataagttgcagctc
ggctcgctcatttctaccttcacacaagctcgagctgctctggttgccgcagcaaagtag

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