Rhododendron vialii: 131307592
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Entry
131307592 CDS
T09330
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03013
Nucleocytoplasmic transport
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131307592
03015 mRNA surveillance pathway
131307592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131307592
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131307592
5.6.2.5 RNA 5'-3' helicase
131307592
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131307592
mRNA cycle factors
Common to processing body (P body) and stress granule
131307592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
NPHP3_N
SRP54
ATPase
PhoH
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
131307592
NCBI-ProteinID:
XP_058190178
LinkDB
All DBs
Position
11a:complement(9508915..9553691)
Genome browser
AA seq
1263 aa
AA seq
DB search
MDPQGNNLFETASQPDTGATDAYTFLEFNAQGEEEEFHYPEFQELSQQIRSPGAWPAPPS
SDSVSDDRGAASDHHSDASPVSAKGRGGGNQAAAVEALAAGMSGLNFEENVGWDEEGYEY
GKRDFSEHGCRYCGVANPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLH
KDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCP
LIDDRCFLQWLVKVPSEQEQLKARQISAQQINKVEELWKTNPDATLEDLEKPGVDDEPQP
VALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRIAYFVFPKED
NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGFPVDVNHGFSVD
FVWKRTSFDRMQGAMKTFVVDETSVSGYIYHHLLGHEVEVQMARNTLPRRFGAPGLPELN
ASQIFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAE
KISATGLKVVRLCAKSREAVSSPVEHLTLHYQVCHLDTSEKSELHKLQQLKDEQGELSSS
DEKKYKALKRATEREISQSADVICCTCVGAGDPRLTNFRFRQVLIDESTQSTEPECLIPL
VLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPALSE
FPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEA
SNVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ
GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGHGIVPDAFGSVASSSPNSDR
RNGRSRGSYLPSGPPNGTHKPGLYPAGYPMPRVPLPAYHGAPLSQPYAIPTRGAVHGPVG
AVPHGPQPGNRGFGAGRGSSPIGSHLSHQQSSRQPIGSLGPTFNFPPLENPNSQPSVGGP
LSQPGFVSNMTGQGSSQTFQDGFSMGGMSQDFLGDDFKSQGSHVMYNVAEFSTEASQSGY
AVDYVTQGAHAGFPGSFLNQNSHAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFTDPSQD
DASQNHFGVANANALQSQGLMNPLYSQPFALYNTQPMNLQATQQLQQQQQSQQGQISQNQ
KLH
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcaagggaacaacctcttcgaaacggcgtcgcagcccgacaccggcgccacc
gacgcctacaccttcctcgaattcaacgcgcagggggaggaggaggaattccactacccc
gaattccaggagctctcccagcaaattcgatcccccggggcatggcccgcgccgccctcc
tccgattccgtatcggacgacaggggtgccgcctcggaccaccattccgacgcctcgccg
gtctctgcgaagggcaggggcggcggcaatcaggcggcggcggtggaggcgctggcggcc
gggatgagtgggttgaacttcgaggagaacgttggctgggatgaggaggggtacgagtat
ggtaagagggatttcagtgagcacggttgtcggtactgtggggtggcaaaccccgcgtgt
gtggtgaggtgtaacgtgccgtcgtgtcgaaagtggttctgcaattcccgtgggaatact
tctggctcgcatattgttaaccatttggtgcgagctaaacacaaagaagtttgtcttcat
aaagatagtccccttggagaaacaatccttgaatgttacaattgtggatgccgaaatgtg
ttccttcttggattcatctctgccaaaacagaaagtgttgttgttcttctttgcagggag
ccttgtcttagtgtcaatgccctgaaggacatgaattgggacctgagtcagtggtgtccc
cttatagatgatagatgttttctgcagtggcttgttaaggtgccatctgaacaggagcag
ctaaaggcacgccaaatcagtgctcagcaaataaataaggttgaagaactttggaagacc
aatcctgatgctaccttggaagatcttgaaaagcctggtgtcgacgatgaacctcagcct
gtcgccttgaagtatgaagacgcgtatcagtatcaaaatgtgtttgcgccacttatcaag
cttgaagctgactatgataagatgatgaaagaatctcaaagtaaagacaatctcacgatt
cgatgggatattggtctcaacaaaaagcgcattgcatattttgtttttccgaaggaagat
aatgagttgcgtcttgtacctggtgatgagttgcggcttcgttattcaggagacgctgcc
catcctgcatggcagtcggtagggcatgtgataaaactaactgcacaagaggaggttgct
cttgagcttcgtgccagtcagggatttcctgttgatgtcaaccatggttttagtgttgat
tttgtatggaagcgcacaagttttgatcggatgcagggagcaatgaaaacgtttgtggtg
gatgaaacaagtgttagtgggtatatttatcaccacttgttgggccatgaagttgaggtt
cagatggcccggaatacattgcctcgtcgttttggtgcacctggcctgccagagcttaat
gcatctcagatttttgcagtaaaaagtgtccttcaaaagccagtaagtttgattcaaggt
ccacctggtaccgggaaaactgtgacttccgcagcaattgtttatcatatggctaaacaa
ggccagggtcaggttttggtttgtgctcccagtaatgtggctgttgatcaactagctgaa
aagatcagtgccacgggtttgaaggttgttaggctctgtgcaaaatcaagggaagccgta
agttcccctgttgagcatttaacccttcactatcaggtttgtcatcttgacacatctgaa
aagagtgaacttcacaagttacagcaactgaaagatgaacaaggagaattatccagcagt
gatgagaaaaaatacaaagctctgaagcgagcgacggagagggagatatctcagagtgct
gatgtcatttgttgtacatgtgttggtgctggcgatcctcggctgactaattttagattc
cgccaggtccttattgacgagtctactcaatcaacagagcccgagtgtcttattccctta
gttcttggagcgaagcaggtagttcttgtaggtgaccattgtcagcttggcccagtcata
atgtgcaaaaaagcagcccgtgctgggcttgcccagtctctctttgaacggctagtgcta
cttggtgtgaaaccaatcagattgcaggtacaataccgaatgcatccagccctttcggaa
ttcccttctaacagcttttacgaaggtacacttcaaaatggcgtgacaattaatgaaagg
caatctccaggcattgattttccttggcctgtgccaaatcgtccaatgttcttttatgtt
cagatgggacaagaggagataagtgccagtggaacttcctatctgaaccggactgaggct
tctaatgttgaaaaaattgtgacaacatttttaaggagcggtgtagttcctagtcagatt
ggggtcattacaccatatgagggacaacgagcatatattgtgaactatatgtcaagaaat
ggtgccctccgacagcaactttacaaggaaattgaggttgcaagtgtagattcattccaa
ggaagggagaaagattacattattttgtcttgtgtgaggagtaatgaacatcagggtatt
ggattccttaatgatccacgaaggcttaatgttgcgctcacccgtgcccgttatggtatt
gtcattttggggaaccctaaagttctaagcaaacagccattgtggaatggtttattgaca
cactacaaggagcatgagtgcttggttgaagggcctttgaacaacttaaaacagagcatg
gttcagtttcaaaagcctaaaaagatttataatgaccgcagacttttctttggtggtgga
catggaattgtgcctgatgcttttgggtctgttgcctcgtcaagtccaaattctgatagg
aggaatggtcgctctaggggttcttatttgccatctggcccccccaatggtacccataag
cctgggctatatcctgctggttatcctatgcctagggttcctcttccagcatatcatggg
gccccactttcacaaccttatgctattccaacccgtggagctgttcatggacccgttgga
gctgttcctcatgggccacagcctgggaacagaggttttggggctgggcgtggcagttct
cccataggcagtcatctttcccaccagcaaagctcccgacaacctattgggagtctaggg
cccactttcaacttccctcctttagagaatccaaacagccagccttctgttggcgggcca
ttatcgcagcctggatttgtttctaatatgacaggccaaggatcaagccaaacatttcag
gatggtttctctatgggtggcatgtctcaggatttcttgggtgatgatttcaaaagtcaa
ggatcacatgttatgtataacgttgctgagttctccacagaggcttctcagagtggatat
gctgttgattatgttactcaaggagcacatgctgggtttccaggaagctttctaaaccag
aattcacatgctggatattctcgttttggttcaggaaatgatttcatgtctcaagactac
atggctcatggatcccagggtctctttacacaagttggattcactgatccatcacaggat
gatgcttcccagaaccacttcggtgtggccaatgccaatgcacttcagtctcagggtttg
atgaatccactatattcccagccctttgccctctataatacacagccaatgaacttgcaa
gctacacagcagctgcagcaacagcagcagtcacagcagggacaaatctcccaaaatcag
aaacttcactag
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integrated database retrieval system
