Rhododendron vialii: 131307895
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Entry
131307895 CDS
T09330
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131307895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131307895
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
131307895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
FTCD_C
TPR_16
TPR_2
TPR_CcmH_CycH
Iml2-TPR_39
Motif
Other DBs
NCBI-GeneID:
131307895
NCBI-ProteinID:
XP_058190615
LinkDB
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Position
11a:complement(36680261..36695362)
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AA seq
753 aa
AA seq
DB search
MADKYNIEAAEILANEALRLTISEAVPIYEQLLATFPTAARYWKQYVEAHMAVNDDDATK
QIFSRCLLNCLQIPLWRCYIRYIRKVNEKKGVEGQEETRKAFDFMLSYVGADVASGPVWM
EYITFLKSMPAQTTQEESQRMTAVRKAYQKAIVTPTQHAEQLWKDYENFENSVSRTLAKG
LLSDYQPKYNSARAVYRERKKYIDEIDWNVLAVPPSGYYKEELQWLAWKRFLAFEKGNPQ
RIDSASSNKRIVFTYEQCLMYLYHYPDMWYDYATWHAKSGSVDSAIKVFHRALKALPDSE
MLKYAYAELEESRGAIQPAKKVYESLLGDGVNATPLSHIQYIRFLRRTEGVEAARKYFVD
ARKSPNCTYHVYIAYATMAFCLDKDPKIAHNVFEAGLKRFMHEPGYILEYADFLSRLNDD
RNIRALFERALSSLPPEESVEVWKRFAQFEQTYGDLASMLKVEQRRKEALSRTEEESQSP
LDISLQDVVSRYSFMDLWPCSSKDLDHLARQEWLSKNINKKVERSTLADGAAVVDKASSG
LANNYNSSAKVVYPDTSRMVIYDPRQKSGPSGPGVPAVSSTLTGPSAVAPVAGGTPNAPN
EFLKATPPALLTFLASLPTVEGPSPDVDFVLSICLQSNIPTAQIGKSVNPSKQLQTGPAP
STSDLSGSSKPHPVPSGSSFKTTRDRQSGKKRDRDGQDDDDSATVQSQPLPRDMFKIRQL
QKARGAVARGAVSQTGSTSYGSAFSGELSGSTG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagtataacattgaagctgcagaaatacttgcaaacgaagcactgcgtttg
accatttcggaagcagttccaatatatgagcaactattggctacgtttccgactgcggca
agatactggaagcaatatgtagaggcacacatggccgtgaatgatgatgatgctacgaaa
caaatttttagccgctgtctgttgaactgtctacaaattcctctttggcgatgctatatc
cgttacatcagaaaagttaatgagaagaagggggtagagggtcaggaagagactaggaaa
gcttttgatttcatgctcagctatgttggagctgacgttgcctcgggccctgtatggatg
gagtacatcacctttttaaagtccatgccggctcaaaccacacaagaagagtcgcaacga
atgactgctgtcaggaaagcatatcagaaggctattgttactcctacccagcatgcggaa
caactttggaaggactatgagaattttgaaaattctgttagccgcaccctggcaaaagga
ttattatctgactatcaaccaaaatataacagcgctagggctgtctacagggagcggaag
aaatatattgatgaaattgattggaatgtgcttgctgtgccaccgtctggttattacaag
gaagagctgcaatggttggcatggaagaggtttctagcattcgaaaaaggaaaccctcaa
aggatagatagtgcttcttccaacaaacgaattgttttcacatatgagcagtgcctcatg
tacttgtatcattatcctgatatgtggtatgactatgctacatggcatgcaaaaagtggt
tcagtagattctgcaatcaaagtattccatcgagctctgaaggctcttcctgattcagaa
atgctaaagtatgcttatgcggagctggaggaatctcgtggagcgattcagcctgcaaag
aaagtctatgaaagccttttaggggacggcgtcaatgcaaccccactgtcacatattcaa
tatattcgctttctaagaagaactgaaggagtagaagctgctcgcaagtactttgtagat
gcacgaaaatctccaaactgcacttatcatgtttatatagcttatgccacgatggctttt
tgccttgacaaagatccaaagattgcacataatgtttttgaagctgggttgaaacggttt
atgcacgagcctggatacattcttgaatatgcagatttcttgtctcgtttgaatgatgat
aggaatatcagagcattatttgaacgggcattgagctcacttccaccagaggaatctgtt
gaggtttggaaaagattcgcccaatttgagcagacctatggagatcttgctagcatgttg
aaggttgagcaaagaaggaaagaagcactttctagaacagaggaagagagtcaatcacct
ttagatatttcactacaagatgttgtatcacgttatagtttcatggatctttggccttgc
tcttccaaggatttggatcatttggcacggcaagagtggctttctaaaaacatcaataag
aaagtcgaaagatccactctggctgatggagctgctgttgtagataaggcctcttcagga
ctggcaaacaattataattcctctgcaaaagttgtttatccagacacttctaggatggtg
atatatgatccaaggcaaaagtctggcccatctggacctggagttccagcagtttcaagc
acgttgactggtccaagtgctgttgcaccagttgctggtggaacacccaatgctcctaat
gaatttttgaaagcgacaccacctgcattgctaacatttctagcaagtttgcccactgta
gaaggtccatcgccagatgttgattttgtactatcaatatgtctgcaaagcaacatacca
acagcgcaaattgggaaatctgtaaacccctcaaagcagctgcaaactggccctgctcca
agtacgagtgacctttctggatcaagcaaacctcatccagttccgagtggttcttctttc
aaaacaacaagagacagacagtccgggaaaaagagagatcgagatgggcaagatgatgat
gatagtgcaactgtccaaagccaaccactcccaagagacatgtttaagatacgacaatta
caaaaagctcgaggtgccgttgctcgaggcgccgtttcacaaactggatcaacgtcatat
ggaagtgcattttctggagagctctctggaagcactggctga
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