KEGG   Rhododendron vialii: 131308005
Entry
131308005         CDS       T09330                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
rvl  Rhododendron vialii
Pathway
rvl03018  RNA degradation
rvl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131308005
  09123 Folding, sorting and degradation
   03018 RNA degradation
    131308005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rvl03019]
    131308005
   03041 Spliceosome [BR:rvl03041]
    131308005
Messenger RNA biogenesis [BR:rvl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     131308005
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     131308005
Spliceosome [BR:rvl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    131308005
 Complex C
  U2 snRNP components
    131308005
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 131308005
NCBI-ProteinID: XP_058190777
LinkDB
Position
1a:complement(47347997..47365223)
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtatttcaaggacctagtgggcagagaagtgactgttgaactgaag
aatgacctagcgattcgtggcactctgcattcggttgaccagtatctcaatattaagctc
gagaacactagggttgtggatcaagacaagtatcctcacatgctgtcggtgaggaactgt
tttatcagaggatccgtggtgaggtatgtccagttacctccggatggagttgacattgaa
ctgcttcatgatgccacgagaagagaagctcgcggcggctga

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