Rhododendron vialii: 131308683
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Entry
131308683 CDS
T09330
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
rvl
Rhododendron vialii
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rvl01009
]
131308683
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131308683
Enzymes [BR:
rvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
131308683
Protein phosphatases and associated proteins [BR:
rvl01009
]
HAD phosphatases
Fcp/Scp phosphatases
131308683
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
131308683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
DNase_NucA_NucB
Motif
Other DBs
NCBI-GeneID:
131308683
NCBI-ProteinID:
XP_058191639
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Position
11a:complement(27029739..27037323)
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AA seq
642 aa
AA seq
DB search
MAKNESTTVKDAVHKLQLSLLQGIKTETQLFAAGSLISRSDYQDVVTERSIANSCGYPLC
NNPLPSDQPRKGRYRIALKEHKVYDLHETYMYCSTSCVVNSGTFAGSLQEERCSVLDSAK
LNQIMRLFEGLSLDPKENLGKNGDLGLSELKIQDRTDIKAGEVSMEDWIGPSNAVEGYIP
QRNISSKPLHAKNRKEGSKPNDAKPNKGNSMIFDEMDFKSTTITQDEYTISKLPTGPQTT
TANAKSKQSKGKGSRKKMENSFTIMEMPPSPMQTDYDRKLKEPKEEKSSIVNNAAEAQEE
FRAVKGDHSCAIMPKPSLKSGGAKKQIRSVTWADERADAAEVGNLCEVREMENTKDHANK
SSFPGRGDDDYSVLFGSAEACAIALSQAAEAVAHGESDVPDAVSEAGIIILPPPHDVDED
ESQGDVVMLEPETTRSKWPGKPGVPNYNLFESEDSWYDSAPEGFSLVLSPFATMWMALFA
WISASSLAYIYGQDDSFHEEYLCVNGREYPRKIVLTDGRSSEIKQTLADCLSRALPGLVA
DLRLPTPLSTLEHRMGCLLDTMSFVDPLPSFRMKQWQVIVLLFIDALSVSRIPALIPYMT
SRRTLLNKVLEGAHISAEEYETMKDLIIPLGRVPQFSTQSGG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaacgaatcaaccactgtgaaggatgctgttcacaagctgcaactctctctc
ctccaaggcattaaaactgaaacccagctatttgctgctggttcattgatatcgcggagt
gactaccaagatgttgtcaccgagcggtcaatcgccaacagttgcggttaccctctttgc
aacaaccctttaccctcagaccaaccccggaagggccggtaccgcattgcgctaaaggag
cataaagtttatgatctccatgagacttacatgtactgttcgacgagctgtgttgtaaat
agcggaacgtttgcggggagtttacaggaagagagatgttcagttttggattcggcaaaa
ctaaatcagattatgcggttgtttgagggattgagtttggacccaaaagagaatttgggg
aagaatggggatttaggattatccgagttgaagattcaggatagaacagatattaaggcg
ggggaagtttctatggaagattggattggcccatcaaatgcagttgaaggctatatcccg
cagagaaatatcagttcgaagcctttgcatgccaagaatcgcaaagaaggatccaaacct
aatgatgccaagccaaataagggtaatagcatgatttttgatgagatggacttcaagagt
actacaatcacccaggatgagtacactatttcaaagttgccaacaggtccacagaccact
accgccaatgctaaatccaaacaatcgaagggaaagggtagtcgtaaaaaaatggagaat
agttttacaataatggaaatgccaccttctccaatgcaaactgattatgataggaagtta
aaagaaccaaaggaagagaaaagtagcatcgtcaataatgctgctgaagcgcaagaggaa
ttccgtgctgttaaaggagaccattcttgtgcaatcatgcccaaaccttcccttaaatct
ggaggtgcaaagaaacagattcgctctgtgacttgggctgatgagagagctgatgctgca
gaagttggaaatctctgtgaagttagagaaatggaaaatacaaaagatcatgctaataaa
tccagctttccgggcaggggagatgatgattattcagtcctatttggatcagcagaagcc
tgtgctattgcactgagccaggcagcggaagctgttgctcatggagaatctgacgttcct
gatgcagtatctgaagctggaatcattatactgccccctccccatgatgtggatgaagat
gaatctcaaggggatgttgttatgcttgaaccagaaacaactcgatcaaagtggcccgga
aaacctggggtaccaaattacaatttgttcgaatctgaggattcttggtatgatagtgca
ccagaggggtttagcctggttctatcaccatttgcaacaatgtggatggcactctttgct
tggatatcggcttcttcattggcttatatatatggtcaggatgatagctttcatgaagag
tatctgtgcgttaatggaagagaatacccgcggaaaattgtgttgaccgatggccgttct
tctgaaattaagcaaactcttgctgactgtctttctcgggctttaccaggacttgttgca
gatctcaggttgccaacaccattatctacgcttgagcatcgaatgggatgcttactggat
actatgtctttcgttgatccacttccctcattcagaatgaagcagtggcaagtgattgtt
cttttgtttattgatgctctctctgtttcaagaattccagcacttattccatacatgacc
agtcgaaggacattgcttaataaggtcttggagggtgcacatataagtgcagaagagtac
gagacgatgaaggatctcataataccactcggccgagtgccccaattctccacacagagt
ggtggttga
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