Rhododendron vialii: 131310021
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Entry
131310021 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03013
Nucleocytoplasmic transport
rvl03015
mRNA surveillance pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131310021
09122 Translation
03013 Nucleocytoplasmic transport
131310021
03015 mRNA surveillance pathway
131310021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131310021
03041 Spliceosome [BR:
rvl03041
]
131310021
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131310021
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131310021
Spliceosome [BR:
rvl03041
]
Complex C
Other components
EJC/TREX
131310021
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131310021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
131310021
NCBI-ProteinID:
XP_058192784
LinkDB
All DBs
Position
12a:32290447..32296861
Genome browser
AA seq
430 aa
AA seq
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MAMGEVKDNEAYEEELLDYEEEDEKAPDSVNGKPTGDSAKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRI
LGLARDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPE
QIDTSTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggccatgggtgaagtaaaggacaacgaggcttacgaggaggagcttctcgactacgaa
gaagaagacgaaaaagcccccgactccgtcaacggcaaacccactggcgactccgccaaa
aagggctatgttggaatccacagctcggggttcagagatttcctgttgaaaccagagctt
cttcgagcaattgtagattcaggatttgagcatccttcagaagtgcaacatgagtgtata
ccacaagctatcctaggaatggatgttatctgtcaagcaaagtcagggatggggaaaact
gcggtgtttgttctctctactctgcagcagattgaacctgttgcaggacaagttgctgct
cttgtcctttgtcatacaagggaattggcttaccagatctgccacgagtttgagaggttc
agtacctatttgcctgatattaaagttgctgtcttttatggtggtgtcaatatcaaggtt
cacaaggatttactgaagaatgaatgccctcatattgttgttggaacacctggtagaatc
ttgggtcttgcaagagataaggaccttggcttgaaaaatgtgaggcattttattcttgat
gagtgtgacaagatgcttgaatcacttgacatgaggaaggatgtgcaggaaatttttaag
atgacccctcatgataaacaagttatgatgttctcagctacactcagcaaggagattcgc
ccagtttgcaagaagttcatgcaagatccaatggaaatttatgtggatgatgaggccaaa
ctgactcttcacggtctcgtacagcactacattaaactaagtgagcttgagaaaaatcgc
aagctgaatgacctccttgatgcactggacttcaatcaagttgtcatttttgtcaagagt
gtgaatagagctgctgagctgaacaagttacttgtagagtgcaactttccgtctatctgt
atacattctggaatgtcgcaggaagaaaggttaacacgctacaagagtttcaaggagggt
cataaaagaatccttgtggccactgatttagttggtagaggaattgacattgagcgtgtc
aacattgttatcaattatgacatgcctgattctgctgacacctaccttcatcgcgttggc
agagctggtaggtttggcaccaaagggcttgcaattacatttgtcgcatccgcatccgac
tctgatgttctcaatcaggttcaggaaaggtttgaggtggatattaaggaacttcctgag
caaattgatacttccacttacatgccatcttga
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