Rhododendron vialii: 131310186
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Entry
131310186 CDS
T09330
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
rvl
Rhododendron vialii
Pathway
rvl03022
Basal transcription factors
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131310186
09124 Replication and repair
03420 Nucleotide excision repair
131310186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131310186
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131310186
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131310186
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131310186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
131310186
NCBI-ProteinID:
XP_058193057
LinkDB
All DBs
Position
12a:complement(16236016..16254173)
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AA seq
318 aa
AA seq
DB search
MEHNWREGAGAYNFIEHCLASVYRQKQGLKFLAHRVLGYSSADWYAVEGSLRKQWEERVF
RNFGRSTRLTALYGRVHNYERPCPIYQVVAFLNSVLLLNQLNQVVVIATSFNTCDYVYNL
AAAGALPNQRAKSLLQKLVEFVIKDKQLGKEDSVDGIGSSLLSGSLSMAPCYIQRVFRSG
PHHPQPRILCLHGYPDALEQYVAIMNAIFSAQPSMVPIDSCLLGAQHSAFLQQVACIFIL
EIPVAKFIQSLRKAFLDLFNDSVCTSVRHASYITGGVYMKPQQLDGLFQYLSVGFKTHQC
HMKVPQCCLFTIRYDIGT
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggagcataattggagagagggagcaggagcatataacttcattgagcattgtttggcg
tccgtttatagacaaaaacaagggctcaaattcctcgcacatagagtgttgggttattct
tctgctgattggtatgctgttgaaggatctttgaggaagcaatgggaagagagagtcttc
agaaactttggtagaagtacaaggttgacagccttatatggtcgtgtgcacaactatgaa
aggccatgccccatataccaggtcgttgcgttcttgaactcagttctccttctgaaccaa
ctcaaccaagttgtggtgattgccactagtttcaacacctgtgactatgtctacaatttg
gcagcagcgggggccctgccgaatcagagggcaaagagtttgttgcagaagttggtggag
tttgtgattaaagataagcaattgggcaaggaagactctgtggatgggattgggtcatca
cttctatctggatctttgtcaatggccccttgttatatacagcgggtgtttcgttcaggg
ccacatcatccccagcctcgaatattgtgtttgcatggataccctgatgcacttgaacaa
tatgtagcaatcatgaatgcaatattctcagctcagccgtcgatggtgcccatagattct
tgcttactgggggcacaacattctgctttcctgcagcaggtagcatgtattttcattttg
gaaattcctgtggccaaatttattcaatcattgagaaaggcttttcttgatttatttaat
gatagtgtttgcacatctgtacgacatgcttcttacataactgggggtgtgtatatgaag
ccccaacaactggatggcctttttcagtatctctctgtaggttttaaaactcatcagtgt
catatgaaagtgcctcagtgttgtctttttaccatcagatatgatattggcacctga
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integrated database retrieval system
