Rhododendron vialii: 131310896
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Entry
131310896 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131310896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131310896
03009 Ribosome biogenesis [BR:
rvl03009
]
131310896
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131310896
Spliceosome [BR:
rvl03041
]
Complex A
U1 snRNP components
U1 related factors
131310896
Complex B
131310896
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
131310896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PAP_fibrillin
Motif
Other DBs
NCBI-GeneID:
131310896
NCBI-ProteinID:
XP_058194137
LinkDB
All DBs
Position
12a:complement(29215887..29223118)
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AA seq
655 aa
AA seq
DB search
MNPHDHRYADPLSYHPRRSDLMGPVPPVVPPVMGGGPAAYGRGSPAPYGASEVPYAAGGR
GARGVADSAHGAGGYNGRYPPFQPHAGRGFDIGIGGGGGGGGGGRGYGDGRDGGRGSGHG
GYGGRGFDSGGRGGRSGGGWGSSGRGFDGGRTSDRSFDGGRGGRSFGGGRGRGFDGGRGG
GRGGGRHGGVSKGDLDNITLPKQDFGNLVPFEKNFYIESPSVRATSEQDTMLYRSRREIT
VEGQDVPNPIRVFQEANFPDYCLEVIAKLGFLEPTPIQSQGWPMALKGRDLIGIAETGSG
KTLAYLLPALVHVSAQPRLAQGDGPIVLVLAPTRELAVQIQQEALKFGSRANIRSTCIYG
GTPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLKRVTYIALDEADRMLDMGFEPQIR
KIISQIRPDRQTLYWSATWPKEVETLAKQFLRNPYKVIIGSPHLKANQSINQVVEVVTEM
EKYNRLVRLLNEVMDGSRILIFTQTKKGCDQVTRQMRMDGWPALSIHGDKNQSERDRVLA
EFRSGRSPIMTATDVAARGLDVKDIKCVINYDFPTSLEDYVHRIGRTGRAGAKGTAFTFF
TLANAKFARELIKILQEAGQIVPPSLSPLARSGGSNLGGGNFRSRGRGGYGNRPF
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctcacgaccaccgttacgccgatcctctctcctaccaccctcgtcgaagtgac
ctaatggggccggtgcctccggtggtgcccccggtgatggggggtggtcctgctgcgtat
ggccgtggcagtcctgctccttacggggcctccgaagtgccctatgccgctggtggaaga
ggggctagaggtgttgctgattcggcacacggtgctggtggctataatggtaggtatccg
ccttttcaacctcacgctggaagagggtttgacataggcataggtggtggtggtggagga
ggaggaggtggaagaggatatggtgacggaagagatggaggaaggggaagtggtcatggt
ggttacggtgggaggggatttgattctggtggtcggggaggtagatctggtggtggttgg
ggaagcagtgggagaggttttgatggaggcaggactagtgataggagttttgatggtggc
cgaggtggtaggagctttgggggtggtcgtgggagggggtttgacggaggtcgtggtggc
ggcagaggtggaggtagacatggtggagtatcaaaaggggacttggacaatattactctt
ccgaagcaagattttggcaacttggtcccttttgagaagaacttttacattgagagtcct
tcagtgagagcaacgtctgaacaagacacaatgctttaccgtagtagacgtgaaattact
gttgaaggtcaagacgtccctaatccaattcgggtattccaggaggcaaattttcctgat
tactgccttgaggttattgccaaattgggttttcttgagccgacaccaattcaatctcaa
ggatggccgatggccttaaaaggcagagatttaattggcattgctgagacaggttctgga
aagaccttagcatacctactacccgctttggttcatgtcagtgcacagcctcgtttggca
caaggtgacggccccattgtcctggtattagcacctactagggaattggctgttcagatc
cagcaagaagctttgaaatttggatcacgtgcaaatattagaagtacttgcatttatggt
ggaacccctaaaggaccgcagattcgtgatcttcagagaggtgttgaaattgtaattgcg
acaccaggtcgactgatagacatgttagaagctcagcacacaaacttgaaaagagtgact
tacattgcattggatgaggctgatcgaatgttggacatgggttttgagcctcagatcagg
aaaattatttcccagatccgaccagatagacagacattgtattggagtgccacatggccc
aaggaggtcgaaactctagctaagcagtttttgcgcaatccatataaggtaattattggt
tctccacatctcaaagcaaatcaatctattaaccaagttgttgaagttgtaacagagatg
gagaagtacaacaggctggtcaggctgctaaatgaagtgatggatggaagtcggatacta
attttcacacagaccaaaaagggatgtgaccaagtcactaggcagatgagaatggatgga
tggccagctttgtccatccatggtgataaaaaccagtctgaaagagatcgtgtcctggct
gagtttagaagtggcaggagtcctataatgactgccacagatgttgctgcacgtggtctt
gatgtgaaggacataaaatgtgttatcaattatgattttccaacaagtctggaggattat
gttcatcggattggccgaacaggtcgtgcaggagctaagggaaccgcttttaccttcttc
actcttgcaaatgcaaagtttgcgagagaactcattaagattctgcaagaagcgggacaa
attgtccccccttcattgtctccattggctcgctctggtggttcaaatcttggaggtggc
aacttccgttccagaggacgtggtggctatggcaataggcctttttga
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