Rhododendron vialii: 131311415
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Entry
131311415 CDS
T09330
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131311415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131311415
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131311415
mRNA degradation factors
5'-3' decay
Lsm complex
131311415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
131311415
NCBI-ProteinID:
XP_058194858
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Position
12a:35146007..35150840
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AA seq
135 aa
AA seq
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MSWAGPEDIYLSTSLASYLDKKLLILLRDGRKLLGMLRSFDQFANAVLEGACERVIVGEL
YCDIPLGLYVIRGENVVLIGELDLEKEELPSHMTRVSEAEIKRVSVIFGVLKLHIFGKII
EYHDALPVLLLRHLS
NT seq
408 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggaccagaagatatctatctatctacttctcttgcaagctatcttgat
aagaagcttcttatattgctgcgagatggtagaaagttgttgggaatgcttcgttctttc
gatcaatttgcaaatgctgttctagaaggtgcatgtgagcgagttattgtaggtgaactg
tactgtgacattccattaggtctatatgtaatccgtggcgagaatgtcgttttaatcggc
gaactggacttggaaaaggaggagcttccttcacatatgactcgcgtatcagaggcagag
ataaaaagggtaagtgttatttttggtgtcctcaaactgcatatatttgggaagattatt
gagtaccatgatgcactgcctgttctcttgctgaggcacttatcgtag
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