Rhododendron vialii: 131312306
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Entry
131312306 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131312306
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131312306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131312306
03041 Spliceosome [BR:
rvl03041
]
131312306
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131312306
Spliceosome [BR:
rvl03041
]
Complex B
Other components
Prp19-related factors
131312306
Complex C
131312306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
131312306
NCBI-ProteinID:
XP_058195952
LinkDB
All DBs
Position
13a:25870110..25883175
Genome browser
AA seq
922 aa
AA seq
DB search
MSIPQELYPSQDDLPYEEELLRNPFSLKLWWRYLVARTDSPHTKRFTIYERALKALPGSY
KLWYAFLRERLELVRPLPITHREYQKLNNTFERALVTMHKMPRIWIMYLLTLTEQKLVTK
TRRTFDRALCSLPVTQHDRVWDPYLVFVSQRGVPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSGLWQEAAERLAGVLNDDRFYSIKGKTKHKLWLELCDLLVQHADVVSGMNVDAIIRGG
IRKFTDEVGRLWTALADYYIRRELTEKARDVFEEGMTTVVTVRDFSVIFDAYAQFEETVL
LVKMEGVSEDELDEGEGNGEEDEDDDDDEDDRLHVAKIERKLKRFWLSDDKEVELRMARV
EYLLDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKP
HTLWVAFAKLYEDHKDVVNARVIFDKAVQVNYKTVDNLASVWCEWAEMELRHKNFKGALE
LMRRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWAFYVDLEESLGTLESTRAVYERIL
DLRIATPQIIINYAMLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKS
KLERARELFEHAVEVTPAESVKPLYLQYAKLEEDYGLAKRAMKVYDQSTKAVPPHEKLSM
YEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKTMCMKYAELEKSLGEIDRARGVFIY
ASQFADPRSDPDIWNKWNDFEVNHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDK
QPNLDEAMDALKKAGVPEDEMAALEKQLLPDAGKTATKDSNRKVVGFVSAGVESQTEGGL
KVAANHEDIELPEESDSEDDERVEIAQKDVPSAVFGGLVRKREEGDNNDGNGDDSAATKD
TDDGARLGALERIKRQRRGAMV
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccgcaagagttgtacccaagccaagacgaccttccctacgaagaagagctc
ctccgcaaccccttcagcctcaagctatggtggcgctacctcgtcgcccgcaccgactcc
ccccacacgaagcgcttcaccatctacgagcgcgccctcaaggccctccccggcagctac
aagctctggtacgccttcctccgcgagcggctcgagctcgtccgccccctccccatcacc
caccgcgagtaccagaagctcaacaacaccttcgagcgcgcgctcgtcaccatgcacaag
atgccccgcatctggatcatgtacttgctaaccctaaccgagcagaagctcgtcaccaag
acccgccgcaccttcgaccgcgctctgtgctctttgccagtgacccagcacgatagggtt
tgggacccctacctggttttcgttagccagaggggcgtcccgatagagacctcgcttagg
gtttatagacggtacttgaagtacgacccctcgcatatagaggattttatcgagtttttg
gtgaattcgggcctgtggcaagaggccgcggagaggttagccggggttttgaacgacgat
aggttttattcgattaagggtaagactaagcataagctgtggctggagttgtgtgacttg
cttgtgcagcacgcggatgtggtttctgggatgaacgtggatgcgattattcgaggaggg
attaggaagtttacggatgaggttgggaggctttggaccgcgcttgcggattattatatc
aggagggagttgacagagaaagctagggatgtgtttgaggaggggatgactacggttgtc
acggttagggattttagtgtgattttcgatgcctacgcgcagtttgaagagaccgtgctt
cttgtgaagatggaaggagtaagcgaggatgagctagacgagggtgagggaaacggtgaa
gaggatgaggacgacgacgatgatgaagatgaccgtttgcatgtggcgaagattgagagg
aagctgaagagattttggttgtctgatgataaagaagttgaattgagaatggcccgggtc
gagtatctattggataggaggccagaactggctaatagcgtgcttcttcgccaaaacccg
cataacgtagagcaatggcatcggcgagtgaagcttttcgagggtaaccctacaaagcag
attctgacttacacagaggcagtgaggacagttgatcctatgaaagctgtggggaaacct
catacactgtgggttgcttttgccaagttgtatgaggatcacaaggatgttgtcaatgca
agagtgatttttgataaggcggttcaggtcaactacaaaaccgttgataatttggccagt
gtttggtgtgaatgggctgaaatggaacttcggcataagaactttaaaggggctttggag
ttgatgaggcgtgcaacagctgagccttcagtggaggtgaaacggagagtggctgctgat
ggcaacgaaccagtgcagattaagttgcataaatccttgaggctttgggcattctatgtt
gatttagaggaaagccttggaactttagagtcaactcgtgcggtttacgaaaggatattg
gatctaagaatagccacaccacaaatcataattaactatgctatgcttttggaggaacac
aaatattttgaggatgccttcaaggtttatgaaagaggcgtcaagatttttaaatatcca
catgttaaggacatatgggtcacttatctttccaagtttgttaaaagatatgggaaatca
aaattggaacgtgcgcgagagctgtttgagcatgctgttgaagtgaccccagctgaatct
gtgaaaccattgtaccttcaatatgctaaattagaggaggattatggtcttgcaaagcga
gcaatgaaggtttatgaccaatctacaaaggcggttccgccccatgagaaattgagcatg
tacgagatctacatagctcgtgccgctgagatattcggtgttccaagaacaagggaaata
tacgagcaagccatagaatctggtcttccggacaaagatgtcaagaccatgtgtatgaaa
tatgctgagctggagaagagccttggagaaatagatcgtgctcgtggggttttcatatat
gcatctcagtttgcggatccgcgatcagatcctgatatatggaacaaatggaacgatttt
gaggtgaaccatggtaatgaagacaccttccgagaaatgctaagaattaaaaggagtgtt
tctgcaagttatagccagacacatttcatccttcccgagtatctgatgcaaaaggataag
cagccaaatctcgacgaagcaatggacgcactaaaaaaagccggtgttccagaagacgaa
atggctgctctagagaagcaattattgcctgatgccggtaaaactgctaccaaagatagt
aacaggaaagtagtgggttttgtgagcgcgggagtggagtctcagactgaaggaggatta
aaagttgctgcaaatcacgaggacattgagctaccggaagagagtgactcggaagatgat
gagagagttgagattgcacaaaaagatgttccctctgccgtttttggtggtttagttagg
aagcgggaagagggcgacaataatgatggcaatggagatgatagcgctgctactaaagat
acagatgatggggcccgtcttggcgcacttgagagaataaaaagacaaaggcgaggagca
atggtttga
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