Rhododendron vialii: 131312465
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Entry
131312465 CDS
T09330
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
rvl
Rhododendron vialii
Pathway
rvl03030
DNA replication
rvl03410
Base excision repair
rvl03420
Nucleotide excision repair
rvl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131312465
03410 Base excision repair
131312465
03420 Nucleotide excision repair
131312465
03430 Mismatch repair
131312465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rvl03032
]
131312465
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131312465
DNA replication proteins [BR:
rvl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131312465
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131312465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
PTCB-BRCT
AAA_30
Rad17
AAA_19
AAA_assoc_2
BRCT_2
AAA_5
nSTAND3
AAA_18
RuvB_N
Gp44_lid
Zeta_toxin
Sigma54_activ_2
SurA_N
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
131312465
NCBI-ProteinID:
XP_058196199
LinkDB
All DBs
Position
13a:29892872..29911131
Genome browser
AA seq
1015 aa
AA seq
DB search
MSDIRKWFMKQHDKNNGNAPKPAKPAAAVKLSPVTSQQVNVVHEDQESSGRRKTSKYFAT
EKQKPKDEKELEELSAKRKGRKEGDVSSDVKLPPLKKLHKVDDDVDDDDDYVFPSSKKGV
VDVTPNKKLKSGSGRGIAQKPTHNVESDEDKNDEKDTKPLLKSAGRGRGGKGASRGQAGS
KGIDVDESDEEKDNDSKSAKATGRGRGGKGASAAPGGGRGRGGGGRGGFMNFGERKDPPH
KGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDED
IEGRKSSKAKELGTAFLSEDGLFEKIRASNQGKAAAKEESKKAVNKVVASPVKKSPQKVE
VKNQASNPPAKSAALKGPTASASPAKQKVHIKKGDALLPWTEKYRPKVPNDIVGNQSLVK
QLHDWLTHWDEQFLNTGGKGKGKKHNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQPV
EVNASDSRGKADTKIEKGIGGSTSNSVKELVSNEALSVNMDRSKHPKTVLIMDEVDGMSA
GDRGGVADLIASIKISKVPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVA
KAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRERLLSSAKDEDISP
FTAVDKLFGFNGGKLRMDERINLSMSDPDLVPLIIQENYINYRPSSVGKDDDGIKRLKSI
ARAAESIADGDIINVQIRRYRQWQLSQTGTLASCIIPAALLHGQREILEQGERNFNRFGG
WLGKNSTMGKNLRLLEDMHVHLLASRGSGLGRTTLRVDYLTLLLKQLIDPLRVLPKDEAV
EKVVEFMDFYSISQEDFDSMVEMSKFKGHPNPLDGIQPAVKAALTKAYNKGSRSRVIRTA
DLINLPGIKKAPKKRVAAMLEPVEDGLAEGNGDALAENEENSSDTEDLGDGAGEEKPELD
LQSLNSKGIQVDMDLKGGGTKGAKKVPLGRGKGGAEAADKKGGGRGSGSAVKRKR
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatattaggaagtggtttatgaaacagcatgacaagaacaatggcaatgcaccg
aaaccagcaaaacctgcggcggcagtaaagctttcacctgttacctcccagcaagtgaat
gtggtgcatgaagaccaagaaagttcaggcagaaggaaaaccagtaagtactttgctact
gagaaacaaaaaccgaaagatgaaaaggaacttgaggaactatcagcaaaaagaaagggc
cgaaaggaaggtgacgtatccagtgatgtcaaacttccacctctaaagaaacttcacaaa
gttgacgacgatgtcgacgatgacgatgactatgtttttcccagttcaaagaagggtgta
gtagatgtcacccccaacaagaaactgaagagtggttcgggtaggggaattgcccaaaaa
ccgacacataatgttgaaagcgatgaagataagaatgatgagaaagatacgaaacctctt
cttaagtctgctggaaggggtcgtggaggaaaaggtgcttcaaggggacaggctggcagc
aaagggattgatgttgatgaaagcgatgaagagaaggataatgactcaaagtctgctaaa
gccactgggcggggccgcggtggaaaaggtgcatcagcagcaccaggaggtggaagaggc
aggggtgggggagggcggggtggattcatgaattttggtgaaaggaaagatcctccacac
aaaggagaaaaggaagtcccggaaggtgctcctgattgtttagctggtttgacttttgta
ataagcgggacacttgacagtttggaaagagaggaagcagaagatctgattaaacgccat
ggaggtcgtgtcactggatctgtcagcaaaaagacgagctatctcttatgcgatgaagat
attgaggggcggaaatcctccaaagccaaagagcttggaactgcttttcttagtgaggat
ggattgtttgaaaagatccgggcatcaaatcaaggaaaagcagctgcaaaggaagaatca
aagaaagctgtgaataaggtggttgcatccccggttaagaagagccctcaaaaagtagaa
gtgaagaaccaagcaagcaaccctccagctaaaagtgcagctcttaaaggtccgacagca
agtgcttctcctgcaaagcaaaaagtgcatattaaaaaaggggatgctttgttgccatgg
actgaaaaatatagaccaaaagttccaaatgacattgtagggaatcagtcactggtgaag
cagcttcatgattggctgacacactgggatgagcagttcctgaatactggtggcaaggga
aaggggaaaaaacataatgactctggtgctaaaaaagctgtattactaagtggtacacct
ggcatagggaagactacatcagcaaagttggtcagtcagatgcttggattccagccagtt
gaggttaatgcaagtgatagtcgcggaaaggctgataccaaaattgaaaaaggaataggt
ggaagtacttcaaattctgtgaaggaacttgtttccaatgaagccttgagtgttaacatg
gatcgttcaaagcatccaaaaactgtgctcattatggatgaggttgatggcatgtctgct
ggtgatagaggtggtgtggctgatcttattgctagcatcaaaatctccaaagttcctatc
atctgcatttgtaatgaccgctacagccaaaaactaaaaagtcttgtgaactactgtttg
cttttgagcttccggaaacctacaaagcagcagatggcaaagaggttaatgcaagttgca
aaagcagaaggacttcaagttaatgagattgcactcgaagagcttgcagaaagagtcaat
ggagatatgcgcatggctctgaaccagttgcagtatatgagtctctccatgtcagtcatt
aaatatgatgatgtcagagagcgccttcttagtagtgcaaaggacgaagatatttcacca
ttcacagctgttgataagctttttgggtttaatggggggaaactgcgaatggatgagcgg
atcaacctaagcatgagtgatccggatctagtccctcttatcattcaggaaaactatatc
aattataggccaagctcggttgggaaagatgatgatgggataaaacggcttaagtcaatt
gcccgtgctgcagagtctattgcagatggtgatataataaatgtacagatacggagatat
cgacagtggcagctctcccagactggaaccctagcatcttgcattattcctgctgcattg
ttgcatggccaaagggagatacttgaacagggagaacgtaacttcaatagatttggcggg
tggcttggaaagaactcaacaatggggaagaatttgagacttctggaggatatgcatgtt
catcttcttgcttctcgtggatctggtctgggaaggacaacactgcgagttgattacctt
actcttcttctgaaacagctgattgatccccttagagtgctgcctaaggatgaagctgtg
gagaaggttgtggagtttatggatttctactctataagccaggaggacttcgactctatg
gtggagatgtcaaaatttaagggacacccaaatccgctagatggtatacagccagctgtc
aaagctgcactgacaaaggcatacaataaaggaagcaggtcacgtgtcattcggacagct
gatttaatcaaccttcctggtattaaaaaggcgcctaaaaagcgggttgcagcaatgtta
gaaccagtggaggatggattagcagagggcaatggtgatgccttggcagaaaatgaagag
aattcttcggacacagaagacttgggagatggtgctggtgaggaaaagccagaattggat
ctccagagtctcaactcaaaagggattcaagtagacatggacttgaagggtggtggaacc
aaaggtgccaagaaggtgccattaggcagaggcaaaggaggtgctgaagccgcagataag
aaaggcggaggacgaggttctgggtcggctgtcaagagaaagcgataa
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