Rhododendron vialii: 131312741
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Entry
131312741 CDS
T09330
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131312741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131312741
Enzymes [BR:
rvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131312741
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131312741
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
REV1_C
Motif
Other DBs
NCBI-GeneID:
131312741
NCBI-ProteinID:
XP_058196665
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Position
13a:5856698..5861104
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AA seq
626 aa
AA seq
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MILRPRTFQRRFLCTQISDHPHHSNHRCRWPIKQVTKTNFSEALAEFKTHIHDTDFVAVS
LQKTGSYSSPWHRVLPVDTPDTAYFKAKYAAERFQVLQFAVCPFSVRASKVIAHPYNFHL
FPRDEFKIGMPSYSFSCQSSYLTSMAREGFDFNACIYDGISYLSRSQESASIARIGNLVP
SKCVLQSSSALSVADAVFVERIKSRVKHWINTIKDTGPKNEGTDALINSLRKLILGSEQH
GSRPCLSIDVCSERQVQLVVEMLRDFSDDLVPLLSPAKGGGTQAVRVVLTGSKEDRETFE
RELENLEEEQNKRVRGFREVIDLISASQKPVVAHNSLNDFSFIYSNFLSSLPSSMDEFRS
CLHLVFPHILDVSYLMKEIGPLRKVTNLPAAISFLKGRFFSPIDMEISHQADGNEGKIHG
HNVLRISELFAKLCSILKISPETLKDDDSHLPLVLQGYANTFTPHSTNSQDPVDEDVSIW
TDNPRKVECKDLVFLWGFRGGMSAKMLNKLLRDSHEVFSEEFDVRFLDRSCAVVVFWKSG
SSETFLEAIDSGGKCCESLREMISEGLRAADYQIYRRACRLGLWKSDLADSLDKAVAECD
SNSEADSTGPLEICWNNDLMINLDDL
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgatccttcggcctcgtacgtttcagaggcgcttcctctgcacccagatttccgaccac
ccccaccactccaaccaccgctgccgatggccgataaagcaggtgacaaagaccaatttc
tcggaggcgttagccgagttcaagacccacatccatgacacggacttcgtggccgtgtcg
ttgcagaagactgggtcctactcttctccctggcaccgagtgctccccgtcgacaccccc
gacaccgcctatttcaaggccaagtacgctgccgagaggtttcaggttcttcagttcgcc
gtttgtcctttctccgttagggcttcaaaagtcatcgcccacccatacaactttcatctg
ttcccaagggatgagttcaaaatagggatgccttcctatagtttttcatgccagtcatca
tacttgacatctatggctcgagaaggttttgatttcaatgcctgtatatatgatggcata
tcatatttatccagatcacaagaatcagcttcgatagctcggatagggaaccttgtgcct
agtaaatgcgtactgcaatcctcctctgccctttcggttgctgatgcagtttttgttgaa
aggattaaatcacgagttaagcattggataaatacaattaaagacacaggcccaaagaat
gaagggacagatgcattaataaattccttgagaaaacttatcttaggaagtgaacagcat
gggtctaggccatgcttgagcatcgatgtttgcagcgaacgccaagtgcagcttgtggta
gagatgctgagagacttctctgatgaccttgttcctttattaagtccagccaagggtggg
ggaacccaagcagttcgagttgttttgactggctcaaaagaagacagggaaacttttgag
agggagcttgaaaatctggaagaggagcaaaataagcgtgttcgtggctttcgagaggtg
atcgatttgatttctgcttctcagaaacctgttgttgcccacaactcactcaacgatttt
tcgttcatttattcaaatttcctttcctcattaccttctagcatggatgagttcaggagc
tgcttacatttggttttcccccacatacttgatgtcagctatttgatgaaggaaattggc
cctctcagaaaggttaccaatttacctgcagctatttcttttttgaaaggacgattcttt
tcgccaattgatatggagatcagtcaccaagctgatgggaatgagggcaagatccatggc
cataatgttttgaggataagcgaattgttcgctaaactgtgctctattctcaaaatttcc
cctgaaactctcaaagatgatgatagccatttacccttggtccttcaaggctatgcaaac
accttcactcctcactccacaaactcccaagacccagttgacgaggatgtctcaatttgg
acagacaacccaagaaaagttgaatgtaaggatttggttttcttgtggggattcagaggt
gggatgtccgcgaaaatgctaaacaaattgctccgcgactcccatgaagtgttttctgaa
gaatttgatgtgcgatttttggataggagttgcgctgttgttgttttctggaagtctggt
tcatcggaaacttttctggaggcaattgactctggagggaaatgctgtgaatcgctgagg
gagatgatctcagaaggcttaagggctgcagattatcagatttacaggagagcttgtcgg
ttgggtttatggaaatcagatttagcagattctttggacaaagctgtggcagaatgtgac
agtaattcggaagctgattccacagggccattggagatctgttggaacaatgacttgatg
attaacctggatgatttgtaa
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