Rhododendron vialii: 131312844
Help
Entry
131312844 CDS
T09330
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131312844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131312844
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131312844
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131312844
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131312844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
131312844
NCBI-ProteinID:
XP_058196823
LinkDB
All DBs
Position
13a:14853891..14868995
Genome browser
AA seq
692 aa
AA seq
DB search
MDDGDGVLSFDFEGGLDAGPTIPTASVPVVHSDAVGGGGTANNAAAAAAAPAGGADPAAA
AGGNHSGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVY
KHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQRIQQMTSYNYGNSNRFF
QNRNGNYPQQTEKNQFTQGPNAANQGTAAKSSTTESLNIQPQQQGQQSEQQGNQTQVQNL
ANGQQNQGNRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVE
NVILIFSVNRTRHFQGCAKMSSKIGGSIGGGNWKYAHGSAHYGRNFSVKWLKLCELSFHK
TRYLRNPYNENLPVKISRDCQELEPSIGEQLASMLYLEPDSELMAISLAAESKREEEKAK
GVVNPDNGTENPDIVPFEDNEEEEEEEEEESEEEEESYGPGFAAQGRGGRGRGMPWPPHM
PLARGARPFPGMRGFPPVMMSADGFPYGAVTPDNFPMPDLFGMGPRPFDPFGPRFPTGFV
GPASGMMFHNRPMGGGFGMMMGPTGRAPFMGGMGVGAAGPPRSGRPVGMPQMFQPPLSQP
MQNMNHPIRRDQRGPATDKNERYRDGHEMSASGTDGETLYKQGGKPQEDRGGNDLRNDES
ESEDEAPRRSRHGEGKKKRRGLEADATTGSDQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggacgatggggacggtgtcctgagcttcgatttcgagggcggcctcgacgcgggcccc
accatccccacggcatccgtacccgtagtccactccgacgcagtcggtggcggcgggacc
gccaataacgccgccgccgccgcagcagcgccagcaggtggcgccgatcccgctgcggcg
gcggggggaaaccattcggggcggcggagcttcagacagacggtttgccggcactggctc
cggagcctgtgtatgaagggcgacgcctgcgggttcctccaccagtacgacaaggcccgg
atgccggtctgccgattcttccgcctctacggcgagtgccgcgagcaggattgcgtttac
aagcacaccaatgaggatatcaaggagtgtaacatgtacaagttgggattttgtccaaat
ggccctgattgtcggtataggcatgcaaagctgcctggacctccacctcctgtggaagaa
gtccttcagagaattcagcagatgacttcttacaactatggcaactccaacaggtttttt
caaaaccgaaatggtaattatcctcaacaaacagaaaaaaatcagtttactcaaggtcca
aatgctgctaatcaaggcacagctgcaaaatcttctacaacggagtccctcaatatacag
ccgcagcaacaaggtcaacagtccgaacaacagggcaaccagacccaagtacaaaatctt
gccaatggccagcaaaatcaggggaatagaactgctacgccgcttcctcaaggaatatct
aggtattttattgtgaaaagttgcaatcgtgaaaatttagaattatcggtacaacaagga
gtatgggcaactcagcgaagcaatgaggctaaactcaatgaagcttttgattctgtggaa
aatgttatcttgatattttcagtcaaccggactcgacatttccagggttgtgcaaaaatg
tcatctaaaattggtggctccattggtggagggaattggaagtatgcacatggatctgca
cattatgggcggaatttctctgtgaaatggctaaagttatgtgaattgtcttttcacaaa
actcgttatttgaggaacccttacaatgagaatctgccggtgaagattagcagagattgt
caggagctagagccttctattggtgagcagttggcttctatgctctaccttgagcctgac
agtgaacttatggcaatctcacttgcagcagaatcaaagcgagaggaggaaaaggccaag
ggtgtggtcaatccagacaatgggactgaaaacccagatattgtcccatttgaggacaac
gaagaggaggaagaagaagaagaagaagaaagtgaggaggaggaggaaagctatggccca
ggtttcgcagcacaaggcaggggaggaaggggaaggggaatgccgtggccccctcatatg
cctcttgcacgtggagccaggccttttcccgggatgcggggctttccgcctgtcatgatg
agtgctgatggatttccttacggggctgtcacacctgataattttccgatgcccgacctt
ttcggcatgggccctcgcccttttgacccgttcggtccgaggttccccaccggtttcgtg
ggtcctgcatctggcatgatgtttcacaaccgaccgatgggtgggggattcgggatgatg
atgggtcccaccggacgagcacctttcatgggcgggatgggcgttggagctgcgggccca
ccaagatcaggccgccctgtgggtatgccccagatgtttcagccgcctctgtcacagccc
atgcagaatatgaaccatccaataaggagggatcagagaggacctgctactgataagaat
gaacgatacagagacggtcatgagatgtctgcttcaggaacggatggcgaaacactatat
aagcaaggagggaaaccacaagaagatcgaggtggaaatgacttacggaatgatgagagc
gaaagtgaggatgaggcaccgagaaggtcaagacatggggagggaaagaagaagaggcgt
ggtttggaggcagatgctactactggctctgatcaataa
DBGET
integrated database retrieval system
