Rhododendron vialii: 131313451
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Entry
131313451 CDS
T09330
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rvl
Rhododendron vialii
Pathway
rvl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131313451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131313451
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131313451
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131313451
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131313451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
131313451
NCBI-ProteinID:
XP_058197743
LinkDB
All DBs
Position
13a:22909106..22920421
Genome browser
AA seq
1003 aa
AA seq
DB search
MDEERFVSARENPRYLGTANTTNGDLPAAQKAAALPSILDRFNALLNKREDDEGDEVVVR
LYERVLSELTFNSKPIITDLTIIAGEHRAYAEGIADAICARILEVPVDQKLPSLYLLDSI
VKNIGREYVRYFSSHLPQVFCEAYRQVNANMRPAMRHLFGTWLTVFPAPVLRKIEEQLQL
SPSANHQSSNLPSLKASESPRPIHGIHVNPKYLEARRQLEQSTVDSNNQHARGISSTLKI
YGQNSNSEFEEYDSDNAEVMSSQVGAQRLRSTGRPSFGFAAEKLLPSSSARLPKSSSPFR
IEHGRSLSPPADEYAASNNSPRTVVERASPSQLGFEFGRIKGREELSDWSDTSYRRPETS
VVYNNGVELQRPRALIDAYGNDQRSQTPNYKPLTVDVNGIENTLGAKTWQNTEEKEFDWE
DMSPTLVDRSRSSDIVSSSIRPLESFRTRHGYGTQDVGPLDSDFRRINWSSQSQSSVVKG
SSIISEDPVPLSTTISGRGSSSRITGLHDETTQFMRSRYPQDGFPHYLPQFSQHTHGSEG
PSRNFQMFHPSDANVQYHGSSVVPSRIGDPSIASWKSEALSTSVPPPRGLWPPVNVQKSL
STLPLPLQNQSMSHFDSRNASNAVPNQGLNKSFLPEHQFNSIGNKAISSMKQFSFPNQQT
VPTLSSPQNPDQVTSVQPQLPVSHEVRRNFIPPATFAAVGPMPSLVPPISLGYNPALSNV
MSNPIPGVHPSMPILNTPSNSLYFRRGSGFPPLPAGPRPDSSQMTPVSQNPVPIAPNPQA
GGALSGLISSLMAQGLISLTKQAPVQDSVGLDFNLDILKVRHESAITALYADLPRQCTTC
GLRFKCQEQHSSHMDWHVTKNRISKTRKQKPSRKWFVSVSMWLTGTEALGTDAAPGFLPA
ESIVEEKDDEEFAVPADEDQNVCALCGEPFDDFYSDETEEWMYKGAVYMNAPNGATVGMD
RSLLGPIVHAKCRSESSAVSPEDFGQDEGGYTEEGRRRKRLRS
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagaggttcgtatccgcgagagaaaaccctaggtacctcggcaccgctaac
accaccaacggcgacttacccgcggcgcagaaggcggcggccctgccttcgatcctggac
cggttcaacgctctgttgaacaagagagaggacgacgagggagatgaagttgttgtgcgg
ctttacgagcgggttttatcggaactcactttcaattcgaagccaattatcaccgatctc
actataatcgccggggagcacagggcgtacgccgagggcatcgccgacgcaatttgcgcg
aggattctcgaggtcccagtggatcaaaaactaccttctctttatcttctggacagcatt
gtcaaaaatattggcagagaatatgttaggtatttctcttcccatttgccgcaggttttc
tgcgaggcctacagacaagttaacgccaacatgcgtcctgctatgcggcacctctttggg
acctggttaacagttttcccagctccagtacttcgcaaaattgaggagcaattgcaatta
tctccgtcggcgaatcatcaatcttccaaccttccttctcttaaggcttctgaatctcct
cgaccaattcatggaattcatgtcaatcccaagtacttggaagcaagacgtcagcttgaa
cagtcaacagtggatagtaacaatcaacatgccagaggaatttcttccactttgaagatc
tatgggcaaaactctaacagtgaatttgaagaatatgattctgataatgcagaggtcatg
tcatcacaggtaggggcccaacgattgaggtcaactggtcgtccttcttttggttttgct
gctgaaaagctgcttccatcttcatctgcaaggcttccaaaatcctcctctccttttaga
attgagcatggcaggtcattatcacctccagctgatgaatatgcagcaagtaataattct
cccaggacggttgttgaaagggcctccccatctcagcttggatttgaatttggcagaatt
aaaggcagggaggagttaagtgattggtctgatacttcgtatagacgacctgaaacttcg
gttgtatataataatggagttgagcttcagagaccgagagcattaattgatgcttatgga
aatgatcaaaggagtcaaactccgaactataagcccttgacggttgatgtcaatggaata
gaaaatacgttgggggcgaaaacctggcagaatactgaagaaaaagagttcgattgggaa
gatatgagcccaactttggtagaccgtagtcggagtagtgatatagtttcgtcatctatc
cgtcctcttgaaagctttaggacaaggcatggctatggaacacaagatgtgggacccctg
gattctgatttcaggagaatcaactggtccagtcaatcacaaagttctgtagttaagggt
tcttccattatttcagaagatccagttccactttcaacgaccatttcgggtcgtgggtca
agcagtaggattacaggattgcatgatgagactacacagtttatgcgctctcgttatcct
caagatggttttccccactaccttcctcagttttctcaacacacgcatgggtctgaaggg
ccctcaaggaacttccaaatgtttcacccatcagatgccaatgtgcaatatcatgggtcc
tctgttgttccatcgaggattggagatccaagtattgcctcgtggaagtcagaggctcta
tctacttctgtaccgccaccaagagggctatggcctccagtgaatgtacaaaaatctctc
tctacgcttcctcttccgctacaaaatcaaagcatgagtcactttgattcgaggaatgct
agcaatgcagttccgaatcaaggtctaaacaagtcatttttgcctgagcaccagtttaat
agcattggaaacaaggcaataagctcaatgaagcagttttcatttcccaatcagcaaact
gtaccaaccctttcaagtccacaaaatccagatcaagtcacttctgtacaaccgcaattg
ccagtgtctcacgaggttcgccgaaatttcattccacctgctacttttgctgctgtcggt
ccaatgccctctcttgtaccacccatcagtcttggatataaccctgctctaagtaatgtc
atgtccaacccaattcctggtgtgcatccatctatgccaatcctcaacaccccaagcaac
tctctgtattttcgtagggggtcaggcttcccccctttacctgctgggcctcgtcctgat
tcatcacaaatgacacctgtatcacagaatccagttcccattgcccctaaccctcaagct
gggggtgcattgtctggtctgattagttccctcatggctcaaggtttgatctcattgacg
aaacaagctcctgtgcaggattctgtgggactcgacttcaaccttgacattcttaaggtg
cgccatgaatcagcaataactgctttgtatgctgatctccctcggcaatgcacaacatgc
gggcttcggttcaaatgccaagagcagcacagtagtcatatggattggcatgtaacgaaa
aaccgaatatccaaaactcgtaaacagaagccttcacgcaagtggtttgtgagtgttagc
atgtggcttactggcacagaagcattgggaactgatgcagcccctgggtttttacctgct
gagagcattgtggaagagaaggatgatgaagaatttgctgttcctgctgatgaggaccag
aatgtatgtgcactgtgtggagagccttttgatgatttctatagtgatgagactgaggaa
tggatgtataaaggagctgtctacatgaatgctcccaatggggcaacagtaggcatggac
aggtctctgttgggtcccatagtccatgctaaatgcaggtctgaatctagtgcagtctcc
cctgaagattttggacaagatgaagggggatatactgaagagggtagacgaaggaaacgg
ttgcggagttag
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