Rhododendron vialii: 131313455
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Entry
131313455 CDS
T09330
Name
(RefSeq) protein SPA1-RELATED 2
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
rvl
Rhododendron vialii
Pathway
rvl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
131313455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rvl04121
]
131313455
Ubiquitin system [BR:
rvl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
131313455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_C
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Pkinase
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_DCAF12
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
131313455
NCBI-ProteinID:
XP_058197754
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Position
2a:complement(45616011..45625538)
Genome browser
AA seq
1052 aa
AA seq
DB search
MDEGLGDEAAGVDSVDGKCLLGKDVMTGSHGMATLNEGQYHHGSSPGFAAVLEGKNRDIG
GDSQHPYDSPHCTEDAGVMVEELTLRNYNGENLAIVGTSKSSEILQTWKNQWQHLYQIGS
GVSRGDTLLKDNGQSSSNAWEDVGYTVFSELIRQKPPDDAQNVEHSPNDENKAVASSMSP
PPGGIRTKILSNSGFSEYFVKNTLKGKGVVLKGPTREGFGAEIKGPTNPKAVSTAKVAFD
APLSSSAKTVVSLASGAGRGVGPSLNAVNGGVNLREWMKARHYEANKVARLYIFRQIVDF
VDFSHSQGVALQDLRPSFFKLLPSNQVIYLGSTVHQDTALNLTDQDNLFSENDRDKKRLP
EQALHPAVSQMVKKQKFGENLNLNKRWSQFSSRSGFKAATATDTGLSVVLPQDSWDDLNV
QHNLKREHKSEGNSSSPHGSNELQLRSTCTSDPLEEKWYASPEELNGRGCTFSSNIYVLG
VLLFELLGLFDSERARTAAMSDLHHRILPPNFLSENPREAGFCLWLLHPEPSSRPSAREV
LQSGVISGIVESYGDELSSSLSEDDTESDLLLHFLLALKEEKQKDALKLVEEIKCLETDI
EEVEIRQPKQPLVLSGSPSKPLHSRGNRFQYGEHSSFELHSKLTSGANSEMRLMKNISQL
ESAYFSTRSSIQLSESAAATRTNKELLEDRDGDYPAPKDEKRKKPMDRLGAFFGGLCKYA
RYSKFEVHGVLRNGDLQNSANVICSLSFDRDQEYFAAAGVSKRIKIYDFQALFNKAVDIH
YPAIEMSNKSRLSCICWNSYIRNYLASTDYDGIVKLWDAGTGQGFSQYIEHSKRAWSVDF
SQVDPKKLASGSDDCSVKLWNINERNSLCTIRNIANICCVQFSPYSSHLLAFGSADYKTY
CYDLRNVSTPWCILDEHDKAVSFVKFLDSETLVSASTDNTLKLWDLNKTSSTDLSATSIL
TLKGHTNEKNFVGLSVADGYIACGSETNEVYAYYRSLPMPITSYKFGSIDSISGKETDDN
NGLFVSSVCWKKNSDMLVAANSTGCIKVLQMV
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggattgggcgacgaagcagctggagttgactctgttgatggaaaatgtctt
ctaggcaaagatgttatgacgggatctcatggaatggcgacactcaatgagggtcaatat
caccatggctcatccccgggatttgcagctgttttagagggtaagaaccgagatataggc
ggtgactcacaacatccatatgatagtcctcattgtacagaggatgctggggtcatggtt
gaagagttaacactgagaaattataatggtgaaaacttagctatagtgggtacttccaaa
agtagtgagatattgcagacttggaagaatcagtggcaacatttgtatcaaataggaagt
ggtgtctccaggggtgatactcttttgaaggacaatggtcaatcttcgtcaaatgcctgg
gaggatgttggatacacagttttttcagaattgattcgtcaaaaaccaccagatgacgct
caaaacgtggaacattcaccgaatgatgaaaataaagctgttgcaagcagtatgtcacca
cctcctggaggtatcaggactaaaattctttccaattccgggttttctgagtattttgtc
aaaaatactctgaaaggtaagggggttgtacttaagggtccaactcgtgaaggatttggt
gcggagattaagggcccgactaatccaaaagctgtcagtactgctaaggtagcttttgat
gcaccattgagttcgagtgctaaaacggtcgtgtctcttgcttctggtgctgggcgtggg
gtgggtccttccctcaatgctgtgaatggcggagtcaatttgagagaatggatgaaagcc
aggcactatgaggcaaataaagttgcgaggttgtatatatttaggcagattgtagatttt
gtggatttctctcactctcaaggagttgcattgcaagacttgcggccatcattctttaag
ttgttgccatcaaatcaggttatataccttggatcaactgtccatcaagatactgcattg
aatcttacagatcaggataaccttttctcagagaatgatcgggataagaaaaggctgcca
gaacaggccctgcatcccgctgttagtcaaatggtaaagaagcagaagtttggggagaac
ctgaacttaaacaaacggtggtctcagttttcatcaagatctggctttaaagctgcaact
gctactgatactggtctcagtgttgttttgcctcaggattcctgggatgatttaaacgtt
cagcataacctgaaaagagaacacaaaagtgagggaaactccagcagccctcacgggtct
aatgaactccaactgcggtctacttgtacgagtgatccattggaagagaagtggtatgct
agtcctgaggagcttaatgggaggggatgtacattttcatcgaatatctatgttctgggt
gttcttctctttgagttgcttggcttatttgactctgaaagggcacgtactgctgccatg
tcagatctgcatcataggattcttcctccgaacttcttgtcagagaatcccagagaagct
ggattttgcctttggcttcttcaccctgaaccttcatcacgtccatcagcaagggaagtc
ctgcagtctggtgttataagtggaattgtagaatcgtatggagatgagttgtcatcatct
ttgagtgaagatgatacggaatcagacttattattacattttcttctcgcattgaaagag
gaaaagcagaaggatgccttgaagcttgtagaagaaattaagtgtctcgaaacagatatt
gaagaggtagaaatacggcagccaaaacaaccattagtcctttcaggctcacctagcaag
ccccttcattcaaggggaaacaggtttcaatacggcgaacattcaagtttcgagttgcat
tctaagttaacctccggagctaattctgaaatgaggttgatgaagaacatcagtcaactg
gaaagtgcgtacttctccacaagatccagtattcagctttctgaaagtgctgcggccaca
cgcactaataaggaactattggaagatagagatggagattatccggcaccaaaggatgaa
aagaggaagaagcccatggatcgtttaggagcattctttggcggtttgtgcaagtatgct
cgttatagcaagtttgaagtgcatggggtattaaggaatggagatcttcagaattctgca
aatgtaatctgctctttaagttttgatcgagaccaagagtattttgctgctgctggagta
tctaagaggataaaaatttacgattttcaagcactctttaataaagctgttgatatccat
tatccagctattgagatgtcgaacaaatcaaggctcagctgcatttgctggaatagctat
atcaggaactacctggcttcgactgattacgatggaatagtcaagctatgggatgcagga
actggtcaagggttttctcaatacattgagcacagtaaaagggcttggtctgtggacttt
tcccaagtggatccaaaaaaattagccagtggaagtgatgactgttctgtgaaactttgg
aacattaatgagagaaatagtttatgcacaatcaggaacattgcaaatatctgctgtgtt
cagttctctccttattccagtcatttattagcttttggctctgctgattacaaaacctac
tgctatgatcttcggaatgtttcgaccccctggtgtatactggatgagcatgacaaagct
gttagcttcgtgaagtttttagactctgaaactcttgtttctgcatccactgacaacacg
ctgaagctatgggatctcaataaaactagttccacagatttatcagccactagcatctta
acccttaaaggtcacactaatgagaagaattttgtggggttatctgttgctgatggatac
attgcttgtggttcagagacaaatgaggtgtatgcttattatagatctctgcctatgcca
atcacctcttacaagtttggttccattgattctatttctgggaaggagactgatgataac
aacggactgtttgtttcaagtgtgtgctggaaaaagaactcagacatgcttgttgctgcc
aactccaccgggtgcattaaagtgcttcagatggtttga
DBGET
integrated database retrieval system