Rhododendron vialii: 131313788
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Entry
131313788 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131313788
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131313788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131313788
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131313788
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131313788
Messenger RNA biogenesis [BR:
rvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
131313788
DNA repair and recombination proteins [BR:
rvl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
131313788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
131313788
NCBI-ProteinID:
XP_058198282
LinkDB
All DBs
Position
13a:complement(6135927..6149315)
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AA seq
903 aa
AA seq
DB search
MEFALKKFFGYSTFRPYQKEIIETILEGKDSLVVMATGSGKSLCYQVPPLIVKKTAVVIS
PLLSLMQDQVMALRQRGIKAEHLSSAQTDSSVQRSAESGQFDILYMTPEKACSISNSFWS
NLLDRGICLLAVDEAHCISEWGHDFRVEYKQLCKLRSTLPNVPFVGLTATATEKVRKDIM
NSLKMRDPCVTIGSFDRKNLFYGVKSFSRGALFVDELVGEVSKCVATAGSTIIYCTTIKD
VQQIFESLLKAGIKVGMYHGQMGNKAREESHRSFIRDEFDVMVATIAFGMGIDKPNIRNV
MHYGCPKSLESYYQESGRCGRDGIASMCWLYYTGGDFGKADFYCGEASSESQRTAIMESF
MAAKRYCMLTTCRRKFLLDYFGEKNAPDKCGTCDNCTTSRKESDMSREAFLLISSIQSCG
GNWGLNMPIDVLRGSRAKKIINAQFDKLPLHGLGKELSANWWKALAYQLISHGYLTETIR
DTFKIVSVSPKGLQFLRSSKPDDQPMLVLPVTSEMSGDEEHRNKFSEFGEVNGLAPSKYE
GLSEAEGQLYNMLLEERMKLARAVGTAPYALCGDQTLKKIALTRPSTKARLANIDGVNQH
LLTKYGDRFIQSVKSLSERLNLSLDGITEIQPTIAKSTMHAVPKPDRKITPAKYEAWKMW
HEDGLSFQKIANVPSRPAPIKEGTVAGYVVDAALEGYPIDWARLLEEMGLTCEIYGHIQT
AILKVGSKDKLKPIKDELPEEITYAHIKACLAMQDLGMSPEEVIPPGHLSSCRSNETSDL
LQKSSHPCHVEGPCESKRPAGNFAGHNFLGNCNGADSAPLVYDDDLLSLSKRQKVNAAEE
DPLAVGATESSLLNWIKNYDQGVSLSDILKHFYGSAEESVLELLSCLESEFMIFKKNNMY
ILL
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgctcttaagaaattttttggatactcgaccttccgcccgtaccaaaaagag
atcattgagacaattctggagggaaaggatagcttggttgtcatggccaccggaagtggg
aagtcattgtgctatcaggttccgccactgattgtgaagaaaacagctgtagtcataagc
cctcttttatctctgatgcaagatcaggttatggctttaagacagcgaggcattaaggcc
gaacatctctccagtgctcaaactgactctagcgtgcaacgtagtgctgagagtggtcaa
tttgatattctgtacatgactccagaaaaggcgtgttcaatttctaacagtttttggtcg
aatttgctagacaggggaatttgtctattggctgttgatgaagcgcattgcatttcagag
tggggccatgatttcagggtggaatacaaacagctatgcaagttacgcagtactcttcca
aatgttccatttgttggattaacagcaactgcgactgaaaaggttaggaaggatattatg
aattcacttaagatgagagatccttgtgttactattggctcctttgatcgcaagaatctt
ttctatggagtcaaatctttcagtcgtggtgctttatttgtggatgagcttgttggagaa
gtctctaaatgtgtggcaactgctggatcaactattatatactgtacaaccatcaaagat
gttcaacagattttcgagtcacttctcaaggcaggaattaaagttggaatgtatcatggt
caaatgggtaataaagctcgcgaggagtcacacagatcatttatcagagatgaatttgat
gtcatggttgccactattgcctttggcatgggtattgataagccaaacataaggaatgtc
atgcattatggctgcccaaagagtttagagtcctattaccaagaaagtgggcgatgtggt
cgagatggcattgcttctatgtgttggctttattatacgggaggcgactttggaaaagct
gacttctattgtggagaagcaagctcggaaagtcaaagaacagctattatggagtcgttt
atggctgcaaaacgttattgcatgcttacaacttgcagaagaaaatttttgctggactat
tttggggaaaaaaatgcacctgacaaatgtggaacttgtgataactgcaccacctcaagg
aaggaaagtgacatgtctagagaagcatttcttctaatttcaagcattcagtcttgtggg
ggtaattggggcctcaatatgcctatagatgttcttcgtggatctcgagccaagaaaatt
atcaatgctcagtttgacaagcttccacttcatgggcttgggaaagagttatcagcaaat
tggtggaaagctctagcttaccaattaatttctcatggttatttgaccgagacaattaga
gacacatttaagattgtaagtgtcagtcctaaaggattgcagtttctgagatcttccaaa
cctgatgatcaacctatgttggttctgccggtgactagtgaaatgtctggtgatgaggaa
cacagaaacaaatttagtgaatttggagaggtcaatggtttggctccttcaaaatatgag
ggtctgtcagaggctgagggacaactctataacatgctcttggaagagagaatgaagctt
gcaagagctgttggaactgctccttatgctttatgcggtgatcaaacattgaaaaagata
gcattgacgaggccatctactaaagcgaggctggcaaacattgatggtgtcaaccagcac
cttttgacgaagtatggggatcgtttcattcaaagtgttaaatctctatcggaacgttta
aacctttcgttagacgggatcacggaaatacaacctactattgcaaaatcaacaatgcat
gcagtaccaaagccggacagaaaaataacaccagccaaatatgaagcttggaaaatgtgg
catgaggacggtctctcgtttcaaaaaattgctaatgttcctagtagaccagctccaata
aaagaaggaaccgttgccggatatgttgttgatgctgccctagaaggatatccaattgat
tgggccagactccttgaggaaatgggactaacatgtgagatttatggacatatacagacc
gccatcctaaaagttggttcaaaagacaagttgaagcctatcaaagatgagttaccagaa
gagataacttatgcacatatcaaggcatgtttggcaatgcaagatttggggatgtcgcca
gaagaagtaattccacctggtcacctctctagctgcagaagtaatgagacatcggattta
ctacagaaatccagtcatccatgccacgtggaaggaccttgtgaatctaaaagaccagct
ggaaactttgctggtcataattttctgggtaactgtaacggagcagactctgctccgctg
gtctatgacgatgatctgctttcactaagcaaacgccaaaaggtgaatgcagcagaagaa
gaccctcttgcagtgggggcaacagagagttcattgttaaactggattaagaactacgat
caaggagtttcactttctgatattttgaagcacttctatggatctgcagaagagtctgtg
cttgaactgctgagctgccttgaaagtgagtttatgatatttaagaagaataacatgtat
atacttttgtaa
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