Rhododendron vialii: 131314360
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Entry
131314360 CDS
T09330
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131314360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131314360
Spliceosome [BR:
rvl03041
]
Complex B
Other components
Prp19-related factors
131314360
Complex C
131314360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_YTH1
RRM_occluded
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
131314360
NCBI-ProteinID:
XP_058198926
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All DBs
Position
13a:complement(8166692..8171297)
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AA seq
479 aa
AA seq
DB search
MAHRLSRNVEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTSPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEAPEDESIKTLYVGGLDERVT
EQDLRDNFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNRLVIRGLRLKLMWGR
PQAPKPEGEGSDGGAKQVASVAHSGLLPRAVISQQQNQLLPPGTQEQPPPPQMHYFNIPP
PPQQDRAYYPSMDPQRMGALIRSQEGDPNGSTGLADNKADSEKQHQVQQHYGYQGLPRPP
QGQFQQPYYPPYGYMPPPPQPYQQYPVPYQSTMPPPLPPRPPVAQQYQHSEAAGSSSQN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggttgtcaagaaacgtcgaagccgatggctgggaacgatcggatttcccc
atcatatgcgagtcgtgcctgggtgacaatccatacgttcgaatgactaaagcagattat
gataaggagtgtaagatttgcacaaggccctttacagtttttaggtggaggccaggtcgt
gatgcaaggtataagaaaagtgaaatttgccagacttgcagtaagttgaaaaatgtttgc
caagtttgccttttggatctcgaatatggattgccagttcaggttcgagacaccgccctc
agcatcaattccaacgatgccatccccaagagtgatgtgaacagggaatactttgccgag
gagcatgatcggagggcccgagctggtatagattatgaatcttcatatggaaaggtgcgg
ccaaatgataccattttgaagctccagagaacctcaccatattacaagagaaacagggca
catgtatgcagtttctatgtaaggggcgagtgcacaagaggtgctgagtgcccttacagg
catgagatgcctgaaacaggagagttgtcacagcagaacattaaagatcgctactatgga
gtgaatgatcccgtggcaatgaagctactaaacaaggcaggtgaaatgccctctctggaa
gccccggaggacgagagcatcaaaaccctgtacgtgggtgggctggacgagagagtaact
gagcaagacttacgtgacaacttctatgcccacggtgaaattgagtctgtacgaatggtg
ctgcaacgcgcttgtgcttttgtaacgtacacgacaagagaaggcgcagaaaaagccgcg
gaagagctatcaaacaggctagtcattcggggcctgaggctgaagctgatgtggggtcga
ccacaagctcccaaaccagagggtgaaggctcagatggaggagcaaaacaggttgcgtcg
gtggctcacagtgggttgttgcctagggcagtcatatcccaacagcagaaccaattacta
ccaccaggcactcaggagcaaccacccccaccacagatgcattacttcaacattcctcca
ccacctcagcaggacagggcgtattatccgtcaatggatcctcagaggatgggcgctctc
attcggtctcaagagggggatcctaatggttccacagggttggcagataataaggctgat
tcggagaagcagcatcaagtgcagcagcattatggttatcaaggtttgccgcggccgcct
caaggtcaatttcaacagccttattatccaccgtatgggtatatgccgccgcctcctcag
ccttatcagcaataccctgtgccttatcagtctacaatgccgccacccttgccgcctcgc
cctccggtagcccagcagtatcagcattccgaagcagcagggtcgtcatcgcagaattga
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