Rhododendron vialii: 131314401
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Entry
131314401 CDS
T09330
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131314401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131314401
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131314401
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131314401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
131314401
NCBI-ProteinID:
XP_058198984
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All DBs
Position
2a:15167116..15176551
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AA seq
666 aa
AA seq
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MSGLLNSSLNGTASNHPDSTGRPFTSSFSAQSGAGSPVFHHSGSMQGLHNNIHGSFNVPN
LSSTLSSRNSTTNNVPSSAVQQPTGSLSSGRFGPNNLPVGLSQISHGSNHGHSGVTNRGG
MGVVGSPGFSSSANGVGGSIPGILSTSAAIGNRSSVPGLGVSQMLGNAGPRITSSMGNIV
GGGNIGRSMSSGGGLSVSGLASRLNLAANSGSGNLSVQGPNRLMSGVLQQASPQVISMLG
NSYPTAGGPLSQSHIQAMNNLSSMGMLNDVNSNDGAPFDINDFPQLTSRPNSAGGPQGQL
GSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAMSMMQS
QHFNMGRSAGFNLGGTYSLHRPQQQQQHASSVSSSGVPFSSVNNQDLLHLHGSDMFQSSH
SSYHSQTSGPPGIGLRPLNSPNSVSGMGSYDQLIQQYQHQNQSQFRLQQMSGLNQSYRDQ
GVKSMQSAQAAPDSFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSP
WSDEPAKGDPEFIVPQCYYTKQPPALSQSYFLKFPMDTLFYIFYSMPKDEAQLFAANELY
NRGWFYHRELRLWLTRVANMEPLVKTNTYERGSYICFDPNTWETIRKDNFVVHYEMLEKR
PTLPQH
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtccggattactgaattcatctctgaacggaacggcttcaaatcatccagacagtact
gggcggccttttacttcatctttctctgctcagtccggtgctggctcccctgttttccat
cactcaggatctatgcaagggctgcataataacattcatgggagcttcaatgttcccaac
ttgtccagcacactttcttcccgaaactctacaacaaataacgtcccgtcaagtgcggtt
caacagcccactggaagcctttctagtggacgttttggaccaaataatctccctgttggc
ctttctcagatatctcatggaagcaatcatggtcattcaggtgtgacaaatagaggtgga
atgggggttgttgggagccctggatttagtagtagcgcaaatggtgttggtggttctatt
cctggaattctgtcaacctctgcagcaattggtaatcggagttctgttccaggtctggga
gtgtcccaaatgttgggaaatgcaggtcctcggattaccagttccatgggaaacatagtc
ggtgggggaaacattggaaggagcatgagctctggtggaggattatctgtgtctggtctt
gcttctcgcctaaatctagctgccaacagtggttcgggaaatttaagtgtgcaaggtcca
aatagactaatgagtggtgtgcttcaacaagcttctccgcaggtaatttccatgctagga
aattcctacccaactgctggtgggccactatctcaaagccatattcaagcaatgaataat
cttagttctatgggaatgttgaatgatgtaaattccaatgatggtgctccctttgatata
aatgattttcctcagctgaccagccgccccaattctgctggagggcctcaaggacaattg
ggttcgctacgcaagcaaggtcttggtgttagtcctattgtccaacaaaaccaagagttc
agcatccaaaacgaagattttccagctttaccaggatttaaaggcggcaatgctgattat
gctatggacatgcaccagaaagaacaacttcatgacaatgctatgtccatgatgcagtct
caacacttcaatatgggcaggtctgctggattcaatttgggaggaacatattcactgcat
cgtccacagcagcaacagcaacacgcttcatcagtcagtagcagtggggtccctttttca
tctgtaaacaaccaggatcttctccatctacatggctcggatatgttccaatcatctcat
tcaagctaccattcacagaccagtggaccacccggcataggattaagacctctgaactct
ccaaattcggtttctggtatggggtcatacgaccagcttatccagcaatatcaacatcaa
aaccaatcacaatttcggctgcagcaaatgtctggtttaaatcaatcatacagggatcag
ggagtgaagtctatgcagtccgcacaagccgctcctgactcttttggtttgcttggtttg
ttaagtgtaattagaatgagtgatcctgatttgacatctcttgcacttggaattgatttg
acaacactggggttgaacttgaactcaactgaaaatcttcacaagacatttggttcccct
tggtctgatgagcctgctaagggtgacccagagttcattgtaccacaatgctattatact
aaacaaccacctgccttaagtcaatcgtattttctgaagtttccgatggacacattgttt
tacattttctacagcatgccaaaagacgaagcccaactatttgctgcaaatgaactgtac
aacagaggttggttttatcacagagagctccggctatggttaacaagggttgccaacatg
gagccgcttgtgaagactaacacttacgagagaggatcttatatctgtttcgacccaaac
acttgggaaacaatccgcaaggataatttcgttgttcactatgaaatgttggaaaaaaga
ccaaccctacctcaacattga
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