Rhododendron vialii: 131314560
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Entry
131314560 CDS
T09330
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03020
RNA polymerase
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131314560
09124 Replication and repair
03420 Nucleotide excision repair
131314560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131314560
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131314560
Enzymes [BR:
rvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131314560
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131314560
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131314560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
131314560
NCBI-ProteinID:
XP_058199283
LinkDB
All DBs
Position
2a:complement(20565707..20578470)
Genome browser
AA seq
1189 aa
AA seq
DB search
MDFEEEEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQAKDKKKK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgaagaagaagaagagtacgaccccacgatggaagacgaagaagaggagatc
acccaggaagacgcctgggccgtaatcagcgcgtacttcgaggagaagggtctggtgcgg
cagcagctcgattccttcgacgagttcatccagaacaccatgcaggagatcgtcgacgag
tcggccgacattgagattcgccccgagtcgcagcacaaccccggccaccagtccgatttc
gctgagaccatctataagatcagctttggtcagatatacttgagtaagcctatgatgaca
gagtcggatggagaaactgcgactctgtttccaaaggctgcgaggttgagaaatctaaca
tactccgctcccttgtatgtcgatgtcacaaagagggtcataaagaaaggtcatgatggt
gaagaagttaccgaaactcaggatttcacgaaggtcttcattgggaaggttcctataatg
ctccggtccagttactgcacattgtatcagaactcagagaaagatttgactgagcttgga
gagtgtccttatgatcaaggtgggtacttcatcatcaatgggagtgaaaaggttctgatt
gctcaagagaagatgagcaccaatcatgtctatgtgtttaagaagaggcagccgaataag
tatgcctacgtggcggaagtccggtcaatggcagagtcccaaaacaggccacccagtact
atgtttgtgcggatgctgtctcgaactagtgccaaagggggctcgtctggccagtatatt
cgtgctacccttccgtacatccggacagagattcctattattatcgtgtttcgagcatta
gggttcgtcgccgataaggatatattagaacatatatgttatgattttgcggatactcag
atgatggagttgctgcgaccctctttagaggaagcatttgtcatacaaaatcagcaggtt
gcactggactatatcgggaaacgaggagccactgttggtgtcactaaggaaaagaggatt
aagtatgccaaagagatccttcaaaaggaaatgcttccacatgttggggttggagaatat
tgcgagacaaagaaagcttactattttgggtatattattcaccggcttctgctatgcgca
cttgggcgaagggcagaggatgatagagatcattatgggaataaaagactagatcttgct
ggtcctttgctcggtggcctgtttcgaatgctattcagaaagctaaccagagatgtcaga
ggttacgtccaaaagtgtgttgataatgggaaggatgttaatcttcaatttgcaattaaa
gcaaaaacgattaccagtggccttaagtactcacttgctactgggaactggggtcaggca
aatgcggctggtaccagagctggagtttcacaggtgttaaatcgcttgacgtatgcctcc
actttgtcacatttacgaagactaaattctcctattgggcgtgaagggaaattggcaaaa
ccacgacagttgcacaattcgcagtggggaatgatgtgccctgcggaaacacctgaagga
caagcatgcggtctggtgaagaaccttgcattgatggtgtatataactgttggatcagca
gcatatcctattttggaattcttggaagaatggggtactgagaattttgaggaaatatct
ccggcggttattccccaagctacaaaaatctttgtcaatggttgctgggttggtattcat
cgcgatccagatatgttggtgaggacgcttagacggctgaggagacgggttgatgtcaat
actgaagttggggttgttagagatatccgcttaaaggaactgcggatatataccgattat
ggccgttgcagtcgtcccttgttcatcgtggagaaacaaaggcttcttataaaaaggaag
gatattcaagcattacaacagagggaaacaccagaagatggtggctggcatgatctagtg
gcgaagggattcatagaatacattgatacagaagaagaggagactactatgatttccatg
actattaatgatctcgtttctgctagactcaatccagaggaggcttattctgaaacttat
acccactgtgaaattcacccgtcgctgattttaggtgtttgtgcttcaattataccattt
ccagaccataaccaatcccctcgtaatacgtatcagtcagcaatgggtaagcaggccatg
ggtatttatgtcaccaactaccaatttcggatggatacgttggcttatgtgctgtactac
cctcagaagcctcttgttactactcgggccatggagcaccttcacttcaggcagcttcct
gctggcattaatgccattgttgccattgcctgctattctggatataatcaagaagattcg
gttattatgaaccagtcgtcaatagatcgtggattctttcgatcgcttttcttccgttct
tatagagatgaggagaagaagatggggacacttgttaaggaggatttcggccgtccagat
agagccaataccatggggatgcgacatggttcttatgataaattggatgatgatggtctt
gcgcctccaggtacaagagtttcaggggaagatgtagttatcggcaaaactactccaatt
gctcaggatgaagctcagggtcctgctgcacgttacaccaggcgtgatcatagtacgagc
ttgcgccacagtgaaaccgggatggtggatcaagttttactgacaacaaatgcggatggg
ttgaggtttgttaaagtaagggtgagatcagttaggataccacagattggggacaagttt
agcagtaggcacggacagaagggaacagttggcatgacatatacgcaagaagacatgcca
tggaccatggaagggatcacacccgacattattgtgaatccccatgctattccctctcga
atgacaattgggcagctcattgagtgtatcatgggtaaggttgcagctcatatggggaag
gaaggggatgcgactccttttacagatgtcacggtggacaacatcagcaaggctcttcat
aaatgtgggtaccaaatgcgtgggttcgagaccatgtacaatggtcacacagggcgccgc
ctaacatctatgatattcctgggtcccacatactaccaaagactgaagcacatggttgat
gacaagatccattcacgtggacgagggcccgttcagatccttacaagacagcccgctgag
ggacggtcgcgtgatggtgggctccggtttggtgagatggaaagggactgcatgattgcg
catggtgccgctcactttctcaaagaaaggttattcgaccaaagtgacgcatataggatt
cacgtatgtgagcgttgtgggttgatagctattgcaaacctaaagaagaattctttcgag
tgcagaggttgcaagaacaaaaccgacattgttcaggttcacattccttatgcctgtaag
ctgctgttccaagagctaatgtctatggctatagctccaagaatgctcacaaaggatgtt
aaacaagccaaagacaaaaagaagaaataa
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integrated database retrieval system
