Rhododendron vialii: 131314657
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Entry
131314657 CDS
T09330
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131314657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131314657
03009 Ribosome biogenesis [BR:
rvl03009
]
131314657
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131314657
Spliceosome [BR:
rvl03041
]
Complex A
U2 snRNP components
U2 related factors
131314657
Complex B
131314657
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
131314657
Ribosome biogenesis [BR:
rvl03009
]
Eukaryotic type
90S particles
Helicases
131314657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
AAA_30
FtsK_SpoIIIE
Flavi_DEAD
T2SSE
AAA_7
PhoH
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
131314657
NCBI-ProteinID:
XP_058199435
LinkDB
All DBs
Position
13a:complement(442879..447792)
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSAKLAKFNGGGGAGSNLINRWNGRPYSQRYYEILEKRRTLPV
WHQKEEFFQALKANQTLILVGETGSGKTTQIPQFVLDAVDLDGPDKRRKYMIGCTQPRRV
AAMSVSRRVAEEMDVTIGEEVGYSIRFEDQSSARTVLKYLTDGMLLREAMTDPLLERYKV
IILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFHGAPLMKVPGRL
FPVEILYTEEPERDYLEAALRTVTQIHMHEPPGDILVFLTGEEEIEEACRKIHKEVANMG
DRVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGPAGRKIVVSTNIAETSLTIDGIVYV
IDPGFAKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCYRLYTEKSFNNDLQS
QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT
KLGEIMSELPLDPQMGKMLVVSPKFNCSNEILSISAMLSVPNCFLRPREAQKAADEAKAK
FGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNHRALKSADNVRQQLARIMVRFNLKLS
STDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIY
NEFVLTSRNFIRTVTDVRGDWLVDIAPHYFDLANFPPCEARRKLEKIYKKREREREEEKD
TK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagagaaagaggaaggtgagcttgttcgatgtggtggatgagacctctgca
aaacttgccaaattcaacggcggcggtggcgcaggaagtaatctgataaatcggtggaat
ggaaggccatactcgcagaggtattacgaaatattagagaagaggaggacccttcctgtt
tggcaccagaaggaagagttctttcaagccttgaaagccaaccaaaccctaatcttggtt
ggtgaaactggcagtggtaaaactactcagatacctcagtttgttctggacgctgttgat
ttagatggaccagataagcgcaggaaatacatgataggctgcacccaacctcgcagggtg
gctgcaatgtctgtttctcgtcgagttgctgaagagatggatgtaactattggagaagaa
gttggctatagcattcgtttcgaagaccagagtagtgcaaggacagttttgaagtattta
acagatggtatgcttttgagagaagctatgacggacccgcttttggaaaggtacaaagtg
ataattcttgatgaggcacacgaaagaactctggcaacagatgttttattcgggcttcta
aaagaagtgctgaaaaacagaccggatctcaagttagttgttatgagtgctacccttgag
gcagagaagtttcaaggttatttccatggtgcacctcttatgaaagttccaggaaggcta
ttccctgtcgagattttatacaccgaggagcctgagagggattaccttgaagcggcactc
cgtactgttactcagatacacatgcatgaaccacctggtgacatacttgtatttctgacg
ggtgaggaggagatagaagaagcatgtcggaaaatacataaagaagttgcaaatatggga
gatcgcgtgggccctgtgaaagcagttcccctgtattctacccttcctccagctatgcag
cagaagatatttgaacctgctccacctcccctcacggaaggcggtcctgcagggaggaag
attgtggtgtctacaaacattgcagaaacatctttgactatagatggcatagtttatgtg
atagaccctgggtttgccaaacaaaaagtgtataaccctcgaatacgtgttgaatcttta
ttagtctctccgatatcaaaggctagtgcacaccaaagagcagggcgtgctggaagaaca
caaccaggaaaatgttatagactgtacactgagaaaagtttcaataacgatcttcagtcg
cagacctacccagagatactgagatcaaatcttgcgaatacggttctcaccttgaagaaa
ctagggatagatgatcttgtccattttgatttcatggacccccctgcccccgagacgttg
atgcgtgctttagaggtgttgaattacttgggagcattggatgatgaaggcaacttgaca
aaactgggtgagatcatgagtgagcttcccttggatccacagatgggaaagatgcttgtt
gtcagccccaaatttaactgttcaaatgagattctgtcaatatctgccatgctttcagta
cccaattgctttctccggcctagggaggctcaaaaagctgcagatgaagcaaaagcaaag
tttgggcacattgacggggaccatctgacgctcttgaatgtataccatgcctacaagcaa
aataatgaggatccatcttggtgctacgaaaactttgttaatcatcgagcattaaaatct
gctgataatgtaagacaacagctagctcggatcatggttaggttcaacctcaagttatcc
agcacagattttaacagtcgtgactactacatcaacataagaaaggctatgctagctgga
tatttcatgcaagtggctcatctggagcgcactggacactatttgactgtgaaggacaac
caagtggttcacttacacccttcaaattgcctggatcataagccagagtgggtcatctat
aacgagtttgtcttgacaagcagaaacttcatccgcacagtgacagatgttcgtggtgac
tggttagttgatatagcgccacactactttgaccttgctaacttcccaccatgtgaggca
aggcggaagcttgaaaagatttacaagaaaagggaaagggagagggaggaagagaaggac
acgaagtag
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integrated database retrieval system
