Rhododendron vialii: 131314693
Help
Entry
131314693 CDS
T09330
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03022
Basal transcription factors
rvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131314693
09124 Replication and repair
03420 Nucleotide excision repair
131314693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131314693
03400 DNA repair and recombination proteins [BR:
rvl03400
]
131314693
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131314693
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131314693
DNA repair and recombination proteins [BR:
rvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131314693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
131314693
NCBI-ProteinID:
XP_058199501
LinkDB
All DBs
Position
2a:44899203..44907752
Genome browser
AA seq
776 aa
AA seq
DB search
MGHGGDKSRPSKKHKSSSAKEDRRATVVDDEDAYYAEELDDDYRGEGKKRDFSKLELKPD
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPENMHEYNLTPHSLYAAVSVG
LETETIIAVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKKLLK
DGIIAAARIISEGVHGSDGFAIGKSLGELENGHSELLNEAELAAAAEEKETHSFEVDPAQ
VENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTS
DNKEIFRGNSGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALVEY
ATKLRKPMIYGATSHVERTKILETFKHSRNVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGRIQDRVAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPPDTGADLSYHRLDEQIALLGKVLSVGDDAVGLELLEEDPDDIALHKTTRR
AGSMSAMSGAKGMVYMEYKYGYLGFFLASLFLDLLLVPWFMAFSVCYSFQFLLSCL
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggaggcgacaaaagtcgacctagcaagaagcataaatcctcctccgccaag
gaggaccgtagggcaaccgtggttgatgacgaagacgcttattacgccgaggaattagac
gacgattatcgcggtgaaggaaagaagagagactttagcaagctagaacttaaaccagat
catgctaataggccgttatgggcttgcgctgatggccggattttcctcgaaaccttctcc
cctctctacaagcaagcttacgatttccttattgctatcgccgagcctgtttgcaggcca
gagaacatgcacgaatacaacctgactcctcactcgttatacgcggcggtgtctgttggt
ctggaaaccgaaaccattatagctgtcttgaataagttatcgaagaccaagctccccaaa
gagatgattgacttcattcatgcttcaactgccaattatggcaaagtgaagcttgtactt
aagaagaatcggtactttgtcgaatccccgtttccagaggtattgaagaagttgcttaag
gatggcattatcgctgccgcaagaattatttccgagggggtgcatggaagtgatggattt
gcaattggcaaatcactgggtgagttagaaaatgggcacagcgagttgcttaatgaagcg
gaattggcagcggcagctgaagaaaaagaaactcattcctttgaagttgaccctgctcag
gttgaaaatgtaaagcaacgttgtcttccaaatgctttaaactatcccatgctggaggag
tatgacttcagaaatgatactgtcaatcctgaccttgacatggaattgaagcctcaagca
caacctcggccttatcaggaaaagagtcttagcaagatgtttggaaacggtagagcaaga
tctggcattattgtattaccctgcggtgctgggaagtctctagttggtgtctctgcagcc
agccggataaagaagagctgcctttgtttagcgacaaatgctgtttctgtggatcaatgg
gcatttcagtttaagttgtggtcaacgatacgggatgagcagatatgccggttcacttct
gataacaaagaaatattccgtggtaattcaggggtggtggtaactacatataacatggtt
gctttcggtggcaaacggtctgaagaatctgaaaaaattatagaagaaataagaaataga
gaatggggattgcttctcatggatgaggtgcacgtggttcctgctcacatgtttagaaag
gttatcagcatcaccaaatcccactgcaaacttgggcttactgccacacttgtgagagag
gatgagaggatcacagatttgaacttccttattggtcccaaattgtatgaagcaaattgg
ttggatttggttaaaggaggatttattgcaaatgtacagtgtgctgaagtttggtgtccg
atgacaaaggaattttttgctgaatatctgaagaaagagaattcaaagaagaggcaggca
ctttatgtgatgaaccctaataagtttagggcttgcgagtttcttattcggtttcacgaa
caacagcgtggtgataagataattgtttttgcggacaatctttttgcactggtagagtat
gcaacaaagcttcggaaacctatgatatatggtgctacaagccatgttgagaggacaaag
attcttgagactttcaaacatagtcggaatgtaaacactattttcctttcgaaggttggt
gataattccattgatattcctgaggccaatgtgataattcaaatttcctcgcatgcgggg
tcaaggcgtcaagaagcccaacgacttggtcgtattcttagggcaaagggtcgaattcaa
gatagggtggcaggaggtaaagaggagtataatgcatttttctattcccttgtatccaca
gatacgcaggagatgtactactcaacaaaaaggcaacagttcttaattgatcaaggttat
agctttaaggtaatcacaagcttgccaccacctgatacgggagctgatttgagttatcat
cgccttgatgaacaaattgccctgctaggaaaggtattgagtgtaggtgatgatgcagtt
ggattagagctattagaagaagacccagatgacatagcacttcacaaaacaactcgcaga
gcgggatctatgagtgccatgtcgggagcaaaagggatggtttacatggaatacaagtat
ggttaccttggtttctttttggcttctctgtttctagatttattacttgttccctggttc
atggcattttccgtttgttattcattccaattccttttgtcttgtttatag
DBGET
integrated database retrieval system
