KEGG   Rhododendron vialii: 131314968
Entry
131314968         CDS       T09330                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rvl  Rhododendron vialii
Pathway
rvl03030  DNA replication
rvl03410  Base excision repair
rvl03420  Nucleotide excision repair
rvl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131314968
   03410 Base excision repair
    131314968
   03420 Nucleotide excision repair
    131314968
   03430 Mismatch repair
    131314968
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rvl03032]
    131314968
   03400 DNA repair and recombination proteins [BR:rvl03400]
    131314968
Enzymes [BR:rvl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     131314968
    6.5.1.6  DNA ligase (ATP or NAD+)
     131314968
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     131314968
DNA replication proteins [BR:rvl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    131314968
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     131314968
DNA repair and recombination proteins [BR:rvl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     131314968
   NER (nucleotide excision repair)
    Other NER factors
     131314968
   MMR (mismatch excision repair)
    Other MMR factors
     131314968
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 131314968
NCBI-ProteinID: XP_058199958
LinkDB
Position
13a:complement(11518163..11530814)
AA seq 797 aa
MFGCVAHTFLSPRLTLTLSPRRVLPPLISSLFPPKPFSLLKTPFSPNPKPSTTMSSRPSA
FDALMSGARAAASKKRPQAQSSSPKKRKTPDSNPKNTQSISPKKSSDVSKPLEEAQVSNG
PTSGEPNPNSNEEKSEVKKPRVSDPDSKLGLVTADESVALLKKKPKDFDPKSAAFWKDGE
RVPFLFLAKAFDAIDKESGRIAITEIVCNLLRTVIETTPDDLVAVVYLLGNKVAPAHEGV
ELGIGDASIIKALAEACGAKESQIKSKYQALGDLGLVAKASRSSQGLMRRPEALTVAKVF
DTFRLIAKESGKDSQEKKKNHIKGLVVAATDCEPQYLIRLLQSKLRIGLAEQTLLAAVGQ
AAVYAEKHSSPPAHIDSPLEEAAKIVKQVYSVIPVYDKIVPALLTGGVWTLPKTCSFTPG
VPIGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYLENGSVEIYSRNAEWNTGK
FPDVVVAVSRLKKSSVTSFVLDCEIVAYDREKKRIMPFQILSTRARKNVVLSDIKVDVCI
FAFDILYLNGQPLMHEQLNVRREHLYKSFEEEPGYFQFATAITSNDLEEIQKFLEAAVDT
CSEGLIIKTLSKDATYEPSKRSHNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGA
FLLACYDSSNEEFQSICKIGTGFSESVLEERSASLRSKVIPKPKAYYRYGDSINPDVWFE
PTEVWEVKAADLTISPVHRAAIGIVDSDKGISLRFPRLLRVREDKSPEQASSSDMVAEMY
NAQKNNQRNNQEENEDD
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgttcggatgtgtagcccacacctttctctctcctcgtctcaccctcaccctctctcca
cgacgagtactccctcctctcatttcctctctcttcccgcccaaacccttctccctcctc
aaaacccctttctctccaaaccctaaacctagtacaaccatgtcctctcgcccctccgcc
ttcgacgctctcatgtccggcgcacgagccgccgcctccaagaagagaccccaagcccaa
tcttcttcccccaagaagcgtaaaaccccagactcaaaccctaaaaacacccaaagcatt
agtcccaagaaaagctccgatgtttctaaaccgttagaagaggcccaggtctcaaatggt
cccacatcaggcgaaccaaaccctaattcgaatgaggagaaatcggaagtgaagaaaccg
cgtgtatcagaccctgattcgaagctgggtttggttactgctgatgagagtgttgctctt
ctgaagaagaagccgaaagatttcgacccgaaatcggctgcgttttggaaggacggcgag
cgggtgccattcctgtttctcgccaaggcgttcgacgcgatagacaaggagtcgggacgg
attgcgataacagagatcgtgtgtaatttgttgaggactgtgattgagactactccggat
gatttggttgcggttgtttatcttttggggaataaggttgcgccggcacatgaaggagtg
gagcttggaatcggagacgcttcaattatcaaggcacttgccgaagcttgtggggcgaaa
gaatcacaaattaagagcaaatatcaggccttaggagacttgggcctcgttgcaaaagct
agtcgttcgtctcaagggttgatgcgaagacctgaagcattaacagttgccaaggttttt
gatacatttcggcttattgctaaggaatcgggtaaggatagtcaagagaagaagaaaaac
catataaagggtcttgtcgttgcagctactgattgtgaacctcaatatcttattcgccta
ctgcagtcaaaattgcggatcggtttggcagagcaaaccctcttagctgcagtggggcaa
gctgctgtgtatgctgaaaaacattcttcaccacctgctcatattgattcccctcttgaa
gaagctgcgaagattgttaagcaagtatattctgtaatacccgtgtatgataaaatagtc
cctgctcttcttactggcggcgtatggactcttccaaagacatgtagtttcacaccaggc
gtccccatcggacctatgttggcaaaaccgactaaaggggtgtctgagatcttggataaa
tttcaggatatggagttcacatgtgaatacaagtatgatggagaacgcgctcagatacat
tacctagagaatggttcagttgagatatacagtcgaaatgctgaatggaatactggaaag
tttcctgatgttgttgttgcagtttcaagattaaagaagtcatctgtaacatcatttgtt
ctggattgtgaaattgtggcttatgaccgtgagaagaagagaatcatgcccttccagata
ctcagtacacgggctcggaaaaatgtggtgttgagcgacataaaggttgatgtgtgcatt
tttgcttttgacatcttgtatcttaatggccaaccacttatgcacgagcaacttaatgtt
cgtagagagcatctttacaagtcattcgaggaagagcctggatattttcagtttgcaact
gcaataacatcaaatgatctcgaagaaatacagaagttccttgaagctgctgttgatact
tgttctgagggtttgattatcaaaacattgagtaaagatgctacatatgagccatcaaaa
aggtcgcataactggctaaaattgaagaaagactatatggaaagcattggtgactcccta
gatttagttcctattgctgctttccatggccgggggaaacgtactggtgtttatggagcc
tttctgcttgcttgctatgacagcagcaatgaagaatttcaaagcatatgcaaaattggc
actggattttctgaatcagtgcttgaggagcgttctgccagccttcgttctaaagttatt
cccaaaccaaaggcatactatcgctacggagattcaataaatccagatgtttggtttgaa
cccactgaggtatgggaggtgaaagctgcagatttgactatcagtcccgttcatcgtgct
gcgattggcattgtggattctgataagggtatttctctccgatttccacgtttgcttcgt
gtccgggaagataagtctccagagcaggcctcatcatctgatatggttgctgagatgtat
aatgcccagaaaaacaaccaaaggaataatcaagaggaaaatgaggatgattga

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