Rhododendron vialii: 131315206
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Entry
131315206 CDS
T09330
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
rvl
Rhododendron vialii
Pathway
rvl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
131315206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131315206
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
131315206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
131315206
NCBI-ProteinID:
XP_058200313
LinkDB
All DBs
Position
13a:21497211..21503924
Genome browser
AA seq
522 aa
AA seq
DB search
MSFDLVLKPCCGGCGSSKDLYGSNCKHLTLCFACGKTMAEDGGKCCECGATITRLIREYK
IRACSSSDKNFFIGRFATGLPISISSKRNAQNKWSLLKEGLLGRQLTEALREKYKNKPWL
LVNEMGQSQYHGYLEGAPSSSFYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK
MKNRRKTADGYQRWMMKAANNGPAAFGEVEKIDDKERGASCGRGRKKPRGDDGEANASDN
GEDDEEEQEEAARNITGGGLFRRGNNDDEEGTRGGDLDLDDDDFEKGDDWEHEETFTDDD
EAVGNDPEEREDLGPEIPAPPEIKQDEDETNEEEGGLSQSGKELKKLLGRACGSNVMVVE
GDDGNDDINDDISPVLAPNKKDALKEGPANNIKGTPTISKSAKGNRELNREDAKASDGAP
PKKVKTENEAKSSKDKPSSSSKHASTDSSAGPVTEDEIRAVLLQKSPVTAKDLVNVYFKA
RLRCDKDKDAFKAIFKRICKIEQTDGQSYVVLSEKGMSNKAV
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgatttggtgttgaagccgtgttgtggcggctgtggatcgtctaaggatctt
tatggaagcaattgcaagcacttgactctgtgcttcgcttgtggcaaaaccatggccgag
gacggtggtaaatgctgcgagtgcggcgccaccatcactcgcttgattcgggaatataaa
atccgggcatgttccagcagcgacaagaacttcttcattggtaggtttgctacgggttta
ccaattagtatttcaagcaagcggaatgcccagaacaaatggtctctcctgaaagaagga
ttactaggtcgccaactaactgaagctttgcgggagaaatacaagaataaaccttggcta
ttggtgaacgaaatgggccaatctcagtaccatggttaccttgagggtgcaccatcttca
tctttctacctgctaatgatgcaggggaaggagtttgttgctattcctgcaggttcttgg
tacaactttaacaaagttgcacaatataagcaacttaccttggaggaagctgaagagaaa
atgaaaaatagaagaaaaactgcagatgggtatcaaagatggatgatgaaagctgcgaac
aatggacctgcggcatttggtgaagtagaaaagattgatgataaggaacgtggggctagt
tgtggaagaggacgtaaaaaacctagaggggatgatggtgaagctaatgcttcagataat
ggagaagatgatgaagaggaacaggaagaggcagcgagaaacattacaggtggtgggctc
ttcagaagaggcaataacgacgacgaagaaggtacaagaggaggtgaccttgatctggat
gatgacgattttgagaagggtgatgattgggagcatgaagagacctttactgatgatgat
gaagctgtgggtaatgatcccgaggaacgagaagatttaggtccagagattcctgcccct
ccagaaattaaacaggatgaagatgaaacaaatgaagaggagggaggattgagccaatct
ggaaaagagttgaagaagctgctcgggcgagcttgtggttcgaatgttatggttgtagag
ggtgacgatggcaatgatgatataaatgatgatatttcaccggtgttggctcccaataag
aaagatgctctgaaagaaggacctgccaataacatcaagggaaccccaactatctccaag
tcagcaaagggaaacagagaacttaatcgtgaggatgcaaaagctagtgatggtgcacct
ccaaaaaaagtgaagacagaaaatgaggcgaaatcttcgaaagataaaccttcgtcatct
tcgaaacatgcatcgactgattcatctgctggacctgtcacagaagatgaaatccgggct
gttctattgcaaaagtctcctgtgactgctaaggatcttgtcaatgtgtacttcaaagca
agactacgatgtgacaaggataaggatgctttcaaggctatattcaagaggatttgcaag
atcgaacaaacagatgggcagagctatgtagttttgagcgaaaaaggcatgtccaacaaa
gcagtttag
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