Rhododendron vialii: 131316323
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Entry
131316323 CDS
T09330
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131316323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131316323
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131316323
Spliceosome [BR:
rvl03041
]
Complex C
Other components
Step II factors
131316323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
S1
DEAD
Motif
Other DBs
NCBI-GeneID:
131316323
NCBI-ProteinID:
XP_058201628
LinkDB
All DBs
Position
2a:2384257..2387741
Genome browser
AA seq
1060 aa
AA seq
DB search
MKGGKRFEEIRVPFPLVLKVCTELESNLRLRDKVLGLIHHRHWSDCEKLEDFARPIEAAR
GGVRNADYFVRTLKSVKELEREIETETSDDDRRRGEGMIGMGPTSELVSGVQGRVSTVWK
RVGFVQLSEXRGKEGLASCSXIATGRRIRNAKDVVKRSQEVQVKVIXVSGQKLSLSMRDV
ESQYWXRPLPLKRVRSRRDYEGLSGLEINKEDVPVPVHVTADPXKRLSSPELWDANQMEA
AGVLSVRENPVYDEEGEGSVYRXEGAEEELEIELNDDEPASFYFLQGQSRYSVDMSPVKX
FKNPEGPLSRAAALQSALVIGAERKXGDQQHETLLDSIPKVLNRPWEDPMPETGVEHLAQ
ELRGVGLSAYGRMPEWKKDAFGNPMDVGQSXKAFYPDQRESLPIAKLKHELIQAVRDNQV
LVVIGXGQVSGNNNYKSTQYLAEARXTLQGKDWCTQPRRVAAMSVAQRDAEEXGCRLGEE
VGLRLRFEDCXGPETVIKYMTDXMLLREIXLMRIYSKYAVVMLDEAHERQSTLDVLFGLL
KQHVERRPDLRLIVTSATLDAEKFSGYFFNCNIFTIHXRTYPVEILYTKQPESDYLDASL
ITVMQIHLTEPXGILLLFLTGQERIDHACQCLYERMKGXGKKVPELVILPVTVAGGGFPS
EMQSRIFXPAPAGKRKVVVAXNIAEASLTIDGIFYVIDPGFAKQNIYNPKQGLDSLVITP
ISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPASVPEIQRINLGMTTLTMKAMGIN
DLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVD
LGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKANNFS
GPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGKNFTTVRKAITAGFFFHAGRK
DPQDGYRTLVENQPVYIHPSSSVFQRQPDWVVYNELVMTTKEYVREVIVIDPKWLVELAP
RFFKAADPTKMSKRKRQEWIEPLYDRYHEPNSWRLSKRRA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaggcaagaggtttgaagaaattagagtacctttcccattggtcctcaaggta
tgtacggagctcgagtcaaatctaaggttgagggacaaggttttgggcctaattcatcac
cgacattggtcggactgtgaaaaactcgaggatttcgcccgcccaattgaagcagcacgg
gggggcgtccgtaatgccgactatttcgtccgtacgctaaagagcgtgaaggagctagag
agggaaatcgagacggaaacgagtgatgatgataggaggagaggagaaggaatgataggc
atgggtccgacgagcgaacttgtatcaggtgtacaaggtagagtgtcgacagtttggaaa
agggttggctttgttcagctcagtgagnttaggggtaaagagggtctggcatcatgttct
tagattgctactggaagaaggattcgcaatgcgaaggatgttgtgaaacgcagtcaggag
gttcaagtgaaagtgatanctgtttcgggccagaagttgagtctttcgatgagggatgtt
gaatcacaatactggtgaagacctcttccgctgaaaagagtgaggagccgaagggactat
gaaggtctttctggattagaaatcaataaagaagatgttcctgttcctgttcacgtcact
gccgacccatgaaagaggttgagttcacctgagctatgggatgctaatcagatggaggct
gcaggagtattaagtgtaagggagaaccccgtgtacgatgaagaaggcgaagggtctgta
tatcgangagagggtgctgaggaagagcttgaaatcgagctaaatgacgatgaaccagcc
tctttttattttttgcaaggacaaagccggtactctgtggacatgtcacctgttaagnat
ttcaagaatcctgaagggcctttgagtcgtgcagcagccctccagtctgctctcgtaata
ggagcggagaggaagtgaggggaccagcagcacgagacattgcttgattctattcccaaa
gttctcaaccgtccatgggaagacccgatgccggagacaggcgtggagcatctagcacaa
gagctcaggggtgttggtttatcggcatacggacgcatgcctgaatggaaaaaggatgct
ttcggaaatcccatggacgttggtcagagtnncaaagctttctatccagaccagagagag
agcttgcctattgccaaattgaagcatgaattgattcaggctgtgcgtgacaatcaggtt
ttggttgtaatcggttgaggacaggtttcagggaataacaactacaagtcaacgcaatac
ctagctgaggccaggngtacactacaagggaaagattggtgcactcagcctcgtagggta
gctgcaatgtcggtggcccaaagggatgctgaagaantcggctgccgattgggtgaggag
gttgggctacgccttcgttttgaggattgtnacggacccgaaaccgtgattaagtatatg
actgacngtatgcttctgagagagatttgattgatgagaatttattcaaagtatgcagtt
gtaatgcttgatgaagctcatgagaggcaatccacacttgatgtgctttttggactactg
aagcaacatgttgagaggaggcctgatcttcgattgattgtcacttctgcaacattagat
gctgagaaattttcagggtatttctttaactgcaatattttcacaattcactgaagaact
tatcccgtggagatactctataccaaacagccagaaagtgactaccttgatgcatctctt
atcactgtaatgcaaatccacttgacagaaccctgagggatattgctcctcttcttaact
ggtcaagagaggattgatcatgcatgccagtgtctttatgagaggatgaaagggntagga
aaaaaggttcctgaattagttattttaccggttacagtggcgggggggggctttccaagc
gaaatgcaatctaggatctttngacctgctcctgctggaaagaggaaagtggtcgtggca
nacaatattgcagaagcctctttgacaattgacggcatattttatgtgattgaccccggt
ttcgcgaagcaaaatatttacaatccgaaacaagggcttgattcactggttataactccc
atttcacaagcatcagccaaacagcgagctggcagagctgggcgaaccggccccggaaaa
tgttatcgcctttacaccgaaagcgcttttcataacgaaatgtctcctgcctctgttcca
gaaatacaaaggattaatcttggaatgactactcttacaatgaaagcaatggggataaat
gatctcctatcatttgatttcatggacccgccttctccccaagctctcatttctgccatg
gaacagctgtacagtcttggagctctggacgaggaggggcttctgactaaattgggtagg
aaaatggcggaatttccactggacccaccgttgtctaagatgctactagccagtgtagat
cttgggtgtagtgatgagattttgacaatcattgcgatgattcagaccggaaacatcttc
tacaggccgagagagaaacaagcccaggcggatcaaaagagagccaagtttttccagcct
gagggagatcatctgacattacttgctgtgtacgaggcttggaaggcgaataacttttcg
ggtccgtggtgttttgagaattttgttcagtctcgttccttgaggagggcacaggatgtc
cgtaagcagcttctcaccatcatggacaggtataaattggatgtcgtttctgccgggaag
aattttactacagttcgcaaggccataactgccgggtttttcttccatgccggaaggaag
gatcctcaagacggttatagaactcttgttgaaaaccaaccagtgtacatacaccctagc
agttctgtgtttcagagacagccagactgggtcgtctacaatgagctagtaatgactacg
aaggagtacgtgcgagaggtgatagttatcgaccccaagtggcttgtggagctagcccca
aggttcttcaaagcggcggatcccacaaaaatgagcaagcgcaagcgtcaagagtggatt
gaaccactttatgacagataccatgaacccaactcttggcgcttgagtaaaaggcgtgct
tga
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