KEGG   Rhododendron vialii: 131317810
Entry
131317810         CDS       T09330                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
rvl  Rhododendron vialii
Pathway
rvl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rvl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    131317810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rvl03021]
    131317810
Enzymes [BR:rvl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     131317810
Transcription machinery [BR:rvl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     131317810
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 131317810
NCBI-ProteinID: XP_058203442
LinkDB
Position
2a:complement(41861691..41873808)
AA seq 1224 aa
MGSSDANENPEVTGKDGKKWNGGMDFMDLDELFEEPGTSSKAEKSNGDMLIDTDDDELMD
PTSIHDLGAEFLKNVCRKVSMSFFDQHGLISHQINSYNEFIKTGVQNVFDSIGEVTVEPG
YDPSKKGDNEWRFASVKFGKVTLERPRFWTGDKFSADSGKEFLDLLPRHARLQNMTYSSR
VKVQIHVQVYTQSLVRSDKFKTGKEQYVDKDPISDDNRDVIIGRIPVMLKSDLCWMKGVE
KSDCDFDHGGYFLIKGAEKTFIAQEQICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPP
KREHIRGGEKVLSVYFSAVEFPIWILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIY
DADEICKGFRRGRNAINDIMKKIENCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMV
KCLLQAYTGRRKIDNRDDFRNKRLELAGELLERELRVHVKHAERRMVKAMQRDLYGERVI
HAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQ
VSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNNEEHFLDKLLDSG
MEKLVDDTSTLLSGKVKVFLDGNWVGVCEDSVSFVAALRRKRRRKEVPHQVEIKRDEQHR
EVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGI
NYLFMENEAKAPVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNT
TNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNV
HLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKEAVGKKPKFEDSVNFGKVQSKIG
RVDSLDDDGFPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNF
AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTP
GQLLEAALGKGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHS
LVFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
AANLHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVP
YGAKLLAQELFSMGITMKFETELG
NT seq 3675 nt   +upstreamnt  +downstreamnt
atggggtcctcagatgccaatgaaaaccctgaagtaactggcaaggatgggaagaagtgg
aatggaggaatggatttcatggatctggatgagctatttgaagagccaggaactagcagt
aaggccgagaagtcaaatggagatatgctgatagatactgatgacgatgaactgatggac
ccgacatcaatacacgatttgggagcagaattcctgaagaatgtgtgtaggaaggtttca
atgtcttttttcgatcaacatgggttgatcagtcaccaaatcaattcgtacaatgagttc
ataaaaactggagtccagaatgtatttgactccattggtgaggtcacagtggagcccggt
tatgatccatcgaagaagggggacaatgaatggcggtttgcttcagtgaagtttgggaag
gtaactcttgagcggccgcggttttggacaggtgataagttttcggctgacagcggtaaa
gagttccttgatttgctgcccagacatgctcgccttcagaatatgacatactcatcccga
gtgaaagttcaaattcatgtccaggtatatacacagagtcttgttagaagtgacaagttt
aaaactggaaaagaacagtatgttgataaggaccctataagtgatgataaccgggatgtc
attattggtcggattcctgtaatgctcaaatctgatttgtgctggatgaagggggttgag
aaaagtgattgtgactttgatcatggaggctatttcttgatcaagggtgccgagaagaca
ttcattgcacaggagcaaatctgcctcaaaagactttgggtttctaatagtccatcttgg
acagtagcataccgcgatgtttcaaagaggaaaagagtatatataaaactggaacctcct
aaacgtgaacatattagaggaggagagaaagtcctctcagtatacttctctgcagtagag
tttccaatctggattttgttttttgctcttggtgcatcatctgataaggaagtggttaat
ttgattgattgcgatggtgaagattccagaattgtcaatgtactcatcgcatcgatttat
gatgctgacgagatttgcaagggcttccgaagggggagaaatgctattaatgacattatg
aagaagatagaaaactgcaaatttccacctcaagaatctattgaagcgttcttgagcaat
tacttgttccctaatcttagtggtttccggcaaaaggcccgttttctaggctatatggtg
aaatgtctcttgcaggcctacactgggcgcagaaaaattgataatagagatgattttaga
aacaagaggttggaactggcaggtgagctgcttgaaagagagctgagagtacacgtgaag
catgctgagaggcgtatggtgaaagctatgcaaagagatctttatggggagcgtgtcatc
catgctattgaacactacctggatgcatctattatcactaacggtctttctcgggcattc
tcaactggagcgtggtcacatccttacaaaaagatggaaaggatatctggggtcgtggca
acacttaggagaacaaatccgttgcagactattgctgatatgaggaaaacacggcaacag
gtttcatacaccgggaaggttggagatgcccgatacccacacccctcccactggggaaag
atttgctttctgtctaccccggatggtgaaaattgtgggcttgtaaagaatttggccatc
actggccttgtcagtaccaataatgaggaacattttcttgacaaattgctggattctggt
atggagaaactggtggatgacacttcaactttgctttctggtaaagtcaaagtttttctg
gatgggaactgggttggagtatgtgaagattctgtttcatttgttgccgctctaagacgc
aagcgacgacggaaggaagtaccacaccaggttgagatcaaaagagatgagcagcacaga
gaagtacgcgttttttctgatgcgggaaggattttgcgtcctcttttagttgttgagaac
ttagggaagattaaagcttcgaaggggggagattacagctttcaatctcttctggataag
ggagtaattgaatttattggtactgaagaagaagaagactgcagaactgcttggggtatc
aattacctctttatggaaaatgaagccaaggcacctgtcaagtacacacattgcgaactt
gacatgtcgtttctattagggttaagcgctgccattattccctttgcaaatcatgaccat
gcaaggagggtcctttaccaatcagagaagcattcccaacaggctatgggctttaacaca
acaaatccaaatatcagagtggacaccaatacccatcagttgtactacccacaaaggcct
cttttccgtaccatggtttctgattgtcttggaaagccgggatatcccctagggcacaat
ggaatagtgccaagggctgaatacttcaatggccaatgtgccattgtggcagtaaatgta
cacttggggtacaaccaagaggattccttggtaatgaatcgggcttcattggagcgtggg
atgtttcgttcagagcacatcagaagttacaaagctgacgttgataataaggaagcagtt
gggaagaagcccaagtttgaggattcggtgaattttgggaaggtgcagagcaaaattgga
cgtgttgacagccttgatgacgatggttttcctttcattggtgctaacctgcaaaatgga
gatatcgtcgttgggaggtgtgcggaatctggggctgatcacagtataaaactgaagcac
acggaaaggggtatggttcagaaagtagtcttatctgccaatgacgagggaaagaatttc
gctgtcgtatctttgagacaggttcgaacgccatgccttggggacaagttctccagcatg
catgggcagaagggtgttctgggttttttggagtcccaagagaattttcccttcaccata
caagggattgttccagatattgtggtaaacccccatgcttttccttcaaggcagactcct
ggtcaattgcttgaggctgccttggggaaggggattgcctgtggtgggttgcaaaaatac
gccacccccttttccactctttctgttgatgccgtaacagatcagcttcatagggctgga
ttttcaagatggggaagtgagagggtatacaatggccgaactggtgagatgattcactct
cttgtgtttatgggccccaccttctaccagcgtctgacccatatgtcggaagacaaggtc
aagttccgcaacacgggcccagtgcatcccctcacgaggcagccagtggcagataggaag
cgttttggaggtatcaaatttggtgagatggaacgtgactgccttatagcccatggtgca
gcagcaaatctgcacgaacgactcttcactctcagtgactcctcccaaatgcacatatgc
cgaaagtgcaacaacattgcaaatgttatccaacgcgctgtgccaggtggtcggaagatt
aggggtccctactgccggttttgtgaatctgttgaagagattgttagggtcaatgttccg
tatggtgcaaagctactggcccaagaacttttcagcatgggcatcacgatgaagtttgag
accgagcttggctga

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