Rhododendron vialii: 131318583
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Entry
131318583 CDS
T09330
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131318583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131318583
03036 Chromosome and associated proteins [BR:
rvl03036
]
131318583
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131318583
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131318583
mRNA degradation factors
5'-3' decay
Decapping complex
131318583
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131318583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
131318583
NCBI-ProteinID:
XP_058204458
LinkDB
All DBs
Position
1a:24892242..24908404
Genome browser
AA seq
506 aa
AA seq
DB search
MNPRGRYPPGISGGGGGRGGGLNGNPNFQQRNFQQQYVQRSAMQNQHQQFQNQNQQQLQP
QQHQQQQHQQQQQQQQWLRRSQLGAELSVDEVEKTVQSETVDSSSHDWKARLKLPPVDTR
YRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGT
GKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIEVMVTTGGTSL
KDDIMRLYQPVHLLVGTPGRILDLARKGVCVLKDCSMLVMDEADKLLSPEFQPSVEQLIR
FLPATRQILMFSATFPVTVKDFKDRFLRKPYVINLMDELTLKGITQFYAFVEERQKLHCL
NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC
RNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN
LYRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcgaggacggtatccgcctgggatcagcggcggcggaggtggccgaggtggg
ggcctgaacggaaaccctaactttcaacagagaaactttcagcagcagtacgtgcagagg
agtgcaatgcagaatcaacatcaacagtttcagaatcaaaatcaacagcaacttcaacca
cagcaacatcaacagcagcaacatcaacagcaacaacagcagcaacagtggctaaggagg
agccagttaggggctgaattgagtgttgacgaggtcgaaaagaccgtccagtcggagacc
gttgattcgagttcacatgattggaaggcacgtttaaaacttccaccagttgatacccga
tacaggactgaggatgtgactgccactaaaggaaatgagtttgaagactattttttgaaa
cgcgagctacttatgggaatatacgagaaaggatttgaaagaccgtctcccattcaggag
gaaagtattccaattgctctaactggaagtgacattcttgcaagggctaaaaatggaact
ggaaagactgccgccttttgcattcctgctttggagaaaattgatcaagataataatgtt
attcaagttgttatacttgttccaacaagagaattggctttgcagacttcccaagtttgt
aaggagcttgggaaacacttgaatattgaagtcatggttaccacaggtggaaccagctta
aaagatgacataatgcgtttataccaaccagttcatctgcttgttggaactcctggaaga
atactagatcttgccagaaaaggtgtttgtgttttaaaagattgctcgatgcttgtcatg
gatgaggctgataaactgttgtctcctgagttccaaccttcggtggagcagctgattcgt
ttcctacctgcgacccgtcaaatattgatgttttcagccacatttcctgttactgtcaag
gattttaaagatagatttttgcgcaagccctacgttattaaccttatggatgagcttact
ctcaagggtataactcagttctatgcctttgtcgaagaaagacaaaaactccactgtctt
aacactcttttttcaaagcttcaaatcaaccaatcaatcattttctgcaattcggtgaat
cgagtggaattgttggcgaagaaaattacagagcttgggtattcttgcttctacattcat
gcaaagatgcttcaagatcatcgcaacagagtatttcatgatttccgtaatggtgcatgc
aggaatcttgtttgtacagatctgtttacgagggggatagacattcaagcagtcaatgtc
gtgattaattttgatttccccaggaatgcagagacttacctgcatagggttggtcgatca
gggaggtttgggcaccttgggttggcagtgaatttgatcacttatgaggaccgtttcaac
ttgtataggattgagcaagaacttggaactgagataaagcaaattcctccacatatagac
caggctatttactgtcagtga
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