Rhododendron vialii: 131318729
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Entry
131318729 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131318729
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131318729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rvl03000
]
131318729
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131318729
04121 Ubiquitin system [BR:
rvl04121
]
131318729
Enzymes [BR:
rvl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131318729
Transcription factors [BR:
rvl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
131318729
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131318729
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131318729
Ubiquitin system [BR:
rvl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131318729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
BBP1_N
zf-UDP
Nup35_RRM_2
FYVE
Motif
Other DBs
NCBI-GeneID:
131318729
NCBI-ProteinID:
XP_058204658
LinkDB
All DBs
Position
3a:complement(16318634..16334257)
Genome browser
AA seq
914 aa
AA seq
DB search
MNNEEEKKCPLCAEEMDWTDQQLKPCKCGYEVCVWCWHHIMEMAEKDETEGRCPACRTPY
DKERVVGMEANCKRVVATKKDKKNKPQKAKPKKLEVSNDLSGVRVIQRKMAYVIGLPLSL
ADENLLRRKEFFGQYGKVSKVSLSRTAGGAIQQFINETCSVYVTYSKEEEAIRCIQSIHG
FVLEGRFLRASFGTAKYCHAWLRNLPCTNAACLYLHSIGAEEDSFSKDEEAAVHTRNRVH
QIVGATHNMQRRSGNMLPPPLDDPLNGNGVATDNAIVGSALKDTAHVALISNGHLNCSLS
SKDRDGRIKTPNKTFVDIVGGSSCVPERDGRVAEDIKILNLCSDFSSVAIEEANHLETEY
SDSMFKKASSSSHLPIELPGDKDSQEYFVKPFRESSKFSVFERPYFPPSDACIGNGHSFL
MSDSERQVLPGSCSEVREDFLSFDDQRSKGSDSLSQGSSVLSSSYPIRIPDRSNDHAQHR
KETHTFSDCNMERRTVHNHVDDASIPFTYANSALIDGYNERNFQSSTELDRNLRSSNSFS
NEEIVEHLRRLDGNDIANDNDTSALDVVESSIISNILSMDFDSCDDSLTSSHSLAELLDG
TGGRRGSWNFRNSEESRFSFAKKGNSVNQEPDLDSSFSSIGQASKKYSSLPDSMEKEEHY
LWGPQNHVSTAQSLIPPGFSVPSREPPPGFPPRDRTHQALSVTSGNHLVKTSSLPNSQYL
VGSMTNITNNHDFDFVDPAIMVVGRGKSTNIMSSNSSFEARPSPTPQTYEDEARLWLLMQ
QSASATHQDPTFPSTFVQEAPTAHQGLICPGQIGNGFSPMGDTFGLTSMLMDPHHSYNPS
PVPQLCQQKYSNGHMSNSYGGVGLNEARLRNEMGTAEIQRNERLGLNKFFPGYGGDLMLQ
MPSTGDVYNRVYGL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgaagaagaaaagaaatgtcctttatgcgccgaagagatggactggacggat
cagcaattgaaaccctgcaaatgtggctatgaggtttgtgtttggtgttggcaccacata
atggaaatggcagagaaagatgagactgaagggcgatgtcctgcgtgccgaactccttat
gacaaggaacgagttgtagggatggaagcaaattgtaaaagggtggtggcaacaaagaaa
gataaaaaaaataagccacagaaggcaaagccaaaaaagcttgaagtaagtaacgaccta
agtggtgttagagtgatccagcggaaaatggcatacgtaattgggcttccccttagtcta
gctgatgaaaatcttctacggcggaaggagtttttcggccagtatggaaaagtttcaaag
gtttccctatctcggacggccggtggggctattcagcaatttattaacgaaacttgtagt
gtatacgttacttattcgaaagaggaggaggccattcggtgtattcaatcaattcatggt
tttgttttggaaggtaggtttttaagagcatcttttggaactgctaagtattgccatgca
tggttgagaaacttgccttgtaccaatgctgcttgtttatacttgcatagcattggcgct
gaagaagatagtttcagtaaagatgaagaagctgcagttcatacaagaaatagagttcac
caaatagtgggtgccacacataatatgcaacggcgctcggggaatatgttgcctccccca
cttgatgatcccttaaatggcaatggagttgctactgacaatgcaatagtcggaagtgcc
ctaaaagacactgcccatgtggcactaatttccaacggccacttgaattgttcgctttca
tctaaagatagggatggacgcattaagacacctaacaaaacttttgtggatattgtcgga
ggctctagttgtgttccagaaagagatggtagggttgctgaagatattaagatactgaac
ttgtgctctgacttctcttcagtagccattgaagaagccaatcatctggagactgaatac
tctgattctatgtttaagaaggcttcatcttcgtctcacctgcccattgagttacctgga
gataaagattctcaggaatatttcgtcaaaccatttagagaatcttcaaaattttcagtg
tttgagagaccttattttccaccgagtgatgcatgcataggaaatggacattctttttta
atgtctgattctgaaagacaagttttgcctggttcatgcagtgaagtgcgggaagatttt
ctatcttttgatgatcagagatcaaagggttctgacagcttaagtcaggggtcttctgtt
ctttcttcgtcttatcctattaggattcctgaccgttctaatgatcatgctcagcatcgt
aaagaaactcatacttttagcgattgcaatatggagcggagaactgtacataatcatgtt
gatgatgcttctataccatttacatatgcaaattctgcattgattgatggatacaatgag
aggaacttccaaagttctactgaacttgatagaaatttgagatcttctaattcattttcc
aatgaggaaatagtggaacacttgagaaggcttgacggtaatgacattgccaatgacaat
gacacctctgcattggatgtggttgaaagcagtataatctcaaatatcttgtcaatggac
tttgactcctgtgatgattccttgacctcgtctcacagcttagctgaattgttggacgga
actggtgggcggcgtgggtcttggaattttcgtaatagtgaagaatcaaggttctcattt
gccaaaaaaggaaattctgtgaatcaagaacctgatttggactcatcattcagtagcatt
ggtcaggcgtcaaagaaatattcctccctaccagattccatggaaaaggaggaacactac
ttatggggacctcagaatcatgtgtccacggctcaaagtttgattccaccaggattttca
gttccatccagagaaccacctcctggttttccgccacgtgatagaacacaccaagctctg
agtgtcacctctgggaatcatttggtcaagacctcttcattgccaaacagtcagtacctt
gtggggtccatgacaaatattaccaacaatcatgatttcgattttgtcgatcctgctata
atggttgttgggaggggtaaatcaacaaacataatgagtagtaactcaagctttgaagca
agacccagtcctactccacagacctacgaagacgaggcaagactttggctcctgatgcaa
caatctgcatccgctacacatcaggaccctacatttccttcaacctttgtgcaagaggct
ccaactgctcatcagggcctcatatgcccaggtcaaattggaaacggcttttctcccatg
ggcgatacttttgggcttacttcaatgctaatggatcctcaccattcttataatccctct
cctgttccacagttgtgtcagcagaaatacagtaatggacacatgtcaaatagttatggt
ggggtaggtttgaatgaggccagactaagaaacgaaatgggcacggcagagattcagaga
aatgagagattaggattgaacaagtttttcccagggtacggcggggatttaatgttgcag
atgcccagcacgggtgatgtatacaatcgggtgtatgggttgtga
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