Rhododendron vialii: 131318827
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Entry
131318827 CDS
T09330
Name
(RefSeq) uncharacterized protein LOC131318827 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131318827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rvl03021
]
131318827
03041 Spliceosome [BR:
rvl03041
]
131318827
03036 Chromosome and associated proteins [BR:
rvl03036
]
131318827
Transcription machinery [BR:
rvl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
131318827
Spliceosome [BR:
rvl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
131318827
Complex B
131318827
Complex C
U2 SnRNP specific factors
131318827
Chromosome and associated proteins [BR:
rvl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
131318827
TFTC complex
131318827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
131318827
NCBI-ProteinID:
XP_058204802
LinkDB
All DBs
Position
3a:302704..317309
Genome browser
AA seq
1376 aa
AA seq
DB search
MAVSEEESSSAKSRSNGVHYLAKCVLRGTVVLQVVQGHIRSPSSNDVVFGKETSIELVVV
DEDGIAQSICEQPVFGTIKDLAILPWNEDLHARSPQMTGKDLLVVISDSGKLSFLTFSNE
MHRFFPLTHIQLSAPGNSRYQVGRMLAVDSSGCFIAASAYEDRLAMFSVSMSAGSDIIDK
RIFYPSESEEDSSTSRGLTSICGTIWSMCFISRDFRYASKEHNPVLAIILNRRGSFLNEL
LLLEWNMKEHAVHVISQYAEAGPLAHNVVEVPHSYGFAFLFRVGDALLMDLRDAHNPCCV
HRITLSFLPSSVEEHNFVEESCRVHDADEIFNVAASALLELGDLLKNDDPMSIDGECDNL
KSISNHVCSWSWEPGNGENPRMIFCVDSGELFMFEITFDSNGPRVDLSECLYKGLPCKAL
LWVEDGFLAALVEMGDGMVLKLEDGRLDYRSPIQNIAPILDISVMDYHDEKHDQVFACCG
MAPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKASDLYHSLLVLSFVEQTRVLSV
GISFTDVTDIVGFQPDVCTLACGLVDDGLLVQIYQNSVRLCLPIVASQPEASPFSSPICT
SWSPDNINISLGAVGHHLIVVATSSPSFLFILGVRSLSACHWEVYEMQHVQLQNELSCVS
IPWKHFEQKPLTSRDYMGDKGVIDILPAGVDISNTFVIGTHKPSVEVLSFQPNKGLQVLG
VGSISLTNTVGTAISGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPATSTMFSFVSSNQ
RPCISSCLVNLDASLLKTGGFDLSDKSRDNPVHLQLIAIRRIGITPAFLIPLSDSLDADI
IALSDRPWLLQTARHSLSYTSISFQPSTHVTPVSSVECPKGILFVAENSLHLVEMVHTKR
LNVQKFHLGGTPRKVLYHSESRLLLVMRTELSHDSSSSDICCVDPLSGSILSSFRLDPGE
TGKCMDLVRVGNEQVLVIGTSLSAGPAIMPSGEAESTRGRLIVLCLEHMQNSDSASMTFC
SKAGSSSQRTSPFREIVGYAAEQLSSSSLCSSPDDNSIEGIKVEETESWHLRLACATIWP
GMVLAVCPYLDRYFLASAGNAFYVCGFPNDNSQRVRRLAVGRTRFMIMTLTAHFTRIAVG
DCRDGILFYTYHEDARKLDQLYCDPVQRLVADCILMDVDTAVVSDRKGSIALLSCSNQLE
DNASPERNLTRSCSFYMGEIAVSIRKGSFSYKLPADDILKGFDVANTIMDLSHNSIMAST
LLGSIIVFIPISREEHALLEALQARLVVHPLTAPILGNDHNEFRNRESSAGVPKILDGDM
LAQFLELTSMQQEAVLELPLGSPDTVMLSSKPPSSPAPITVNQVVRLLERVHYALN
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtcagaggaagagtcatcgtcggccaagtctcgatccaacggcgtccactac
ctcgccaagtgtgtactcagaggtaccgttgttcttcaggttgtccaaggccacatccgc
tctccttcctccaacgacgtcgtcttcggcaaggagacatccatagaattggtggtagtt
gatgaagatggaattgcacaatccatctgtgagcagccggtatttggcactataaaagat
ctcgccattctaccatggaatgaggaccttcatgcgagaagcccacagatgacggggaaa
gaccttctggtggttatttctgattctgggaagctttcatttctcacattttctaatgaa
atgcacaggtttttcccattgacacatatacaactttctgctcctggcaactcaaggtat
caggttggaaggatgctggctgttgattcttctggctgcttcattgctgctagtgcatat
gaggatcgattggctatgttctcagtttcaatgtctgcgggcagtgatatcattgacaag
agaatattttatccttctgaaagtgaagaggattcaagtacttccagaggtctcaccagt
atttgtggtaccatatggagcatgtgctttatttccagagattttcggtatgcaagtaag
gagcacaaccctgtattagccattatattgaataggaggggatcattcctgaatgagctt
ttgttattggaatggaatatgaaggaacatgctgttcatgtaatttctcagtatgctgaa
gctggacctttagcacataatgtggttgaagttcctcattcttatggatttgcctttctg
ttcagggttggtgatgctctcttaatggatctcagggatgctcacaacccttgctgtgtc
catagaataaccttaagttttttgcctagttcagtggaggaacataattttgttgaagaa
tcatgtagagtacatgatgctgatgaaatatttaatgtagctgcctctgcgttactggag
ctgggtgacttgcttaaaaatgatgatcccatgagtatagatggagaatgtgacaatctg
aagtcaatctcgaaccacgtgtgctcatggagttgggaaccaggaaatggagagaatcca
aggatgattttttgtgtagatagcggagaactttttatgtttgaaattacttttgattct
aatggccccagagttgatctatctgaatgtctctacaaaggtcttccatgcaaagcacta
ttatgggtcgaagatggatttttggctgcacttgttgagatgggagatgggatggtcttg
aagttggaagatggaaggctagattacagaagtcctattcaaaacattgcaccaatctta
gatatatcagtcatggattaccatgatgagaaacatgatcaagtatttgcttgctgtggg
atggcaccagaaggatctttgaggattattcgaagtggcatcagtgtagaaaagctgttg
aggactgccccaatttatcaaggaataactggtacctggacagtaaagatgaaagcaagt
gatttgtatcattccttgctagtgttatcatttgttgaacaaacaagggtgctatcagtt
ggcataagctttacggacgtgactgacatagttggtttccagcctgatgtttgtaccttg
gcatgtggccttgtggatgatggtttgctggtccagatataccaaaattctgttaggctt
tgtttacctattgttgcttcccagcctgaagctagtcctttttcatctccaatttgtaca
tcttggtctcctgataatattaatatcagtttgggggccgttggacatcatttgatagtt
gtagctacttccagtccaagcttcttgtttattcttggggtccgatctctatcagcgtgt
cattgggaagtatatgaaatgcaacatgtgcaattgcagaatgaattatcctgtgtttct
attccttggaagcattttgagcaaaaaccattgacttcacgcgattatatgggggataag
ggagtaatagatatccttccggctggggttgacattagtaatacctttgttattggtaca
cacaagccttcagtggaagtgttgtcttttcaaccaaataaaggtctacaagttcttggt
gtggggtccatttctttaacaaacaccgtaggaactgcgattagtggttgtgttcctcaa
gatgtaaggcttgtattagttgatcggctctatgttctttcaggattgaggaatggaatg
ctacttcgatttgaatggcctgctacgtccacaatgttctcatttgtatcctccaatcag
aggccttgcatcagttcctgtttggtgaacttggatgcttccttattgaagactggaggg
tttgatttgtctgataagtcaagggacaatcctgttcatctacagctaattgcaatacgc
cgcattggcattactcctgccttcctaattccattgagtgattccctcgatgcggacata
attgccctcagtgataggccttggttactgcaaactgccaggcacagcctgtcatataca
tcgatttcttttcaaccttcaacacacgtaacccctgttagttctgttgaatgccccaaa
ggaattctatttgttgcagaaaacagtcttcatttggtggaaatggtgcacacaaaaagg
cttaatgtgcagaagtttcatcttggaggcactccccgcaaggttttatatcacagtgaa
agtaggttgttgcttgtaatgaggactgaactaagccatgattcatcttcctctgatata
tgttgtgtagatccgctcagtgggtcaattttatcatcttttagacttgatcctggggaa
acaggaaaatgcatggatttagtgagggttggaaatgaacaggttttggtgattggaact
agtctgtctgctggtccagctataatgcctagtggtgaagctgaaagtacaaggggtcgt
ttgattgtcctctgccttgaacatatgcaaaactcagatagtgcttctatgaccttttgt
tcaaaggctggttcatcttctcaacgaacttcgcctttccgtgaaattgttgggtatgct
gctgaacagctatcaagcagtagtctttgcagtagcccagatgataatagcattgagggg
attaaggttgaagaaactgaatcatggcatttgaggttagcttgtgcgaccatatggcct
ggaatggtacttgccgtctgcccataccttgatcgttatttcttggcatctgctggtaat
gctttttatgtctgtggttttccaaatgataattctcaaagggtgagaaggctggctgta
ggaaggacacgctttatgataatgactttgactgctcactttactagaattgctgttggt
gattgccgcgatgggatccttttctatacctaccatgaggatgcaaggaaactggatcaa
ctttattgtgaccctgttcagaggttggtggctgattgtattcttatggatgttgatact
gctgttgtttcagatcgtaaggggagtattgctctcttgtcatgttcaaatcagttagaa
gataatgcaagtccagaacgcaatctaacacgaagttgttcattctatatgggtgagata
gctgtgagcatcaggaaaggttcattttcgtacaaactaccagctgatgacatactgaag
ggctttgatgttgctaatacaattatggatttgtctcataatagtattatggccagtacg
ctattagggagcataatagtcttcattcctatatcaagggaagagcatgctcttttggaa
gctttgcaagctagactggtggttcatcccctaactgctcctattctaggaaatgatcac
aatgaattccgcaaccgtgaaagttcggctggagtacccaagatacttgatggggatatg
ttagctcagttcttggagcttacaagtatgcaacaagaggcggtgctagagttaccactt
ggttcaccagatacagtgatgttgagttcaaagccaccttcttcgcctgcaccaattact
gttaaccaggtggttcgacttcttgaacgagttcattatgccttgaactga
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integrated database retrieval system
