Rhododendron vialii: 131318992
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Entry
131318992 CDS
T09330
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
rvl
Rhododendron vialii
Pathway
rvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131318992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rvl03041
]
131318992
Spliceosome [BR:
rvl03041
]
Common components
Common spliceosomal components
SR proteins
131318992
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
RNA_bind
Motif
Other DBs
NCBI-GeneID:
131318992
NCBI-ProteinID:
XP_058205059
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Position
3a:27779076..27786073
Genome browser
AA seq
407 aa
AA seq
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MSIHFLTDRWASSAFHFLAVTSFLFLFPRRATLTSQSHTILRHQCISCLMNLAQPSFSDT
FPGRNHATLNAEASEYMEKALFSLSYHETSTFPFLFLDIIYFITQGFAFVYMEDDRDAED
AIRGLDRYEYGRKGRRLRVEWTKQERVTRRPESAKKSSTNSRPSKTLFVINFDPYHTRTR
DLERHFDPYGKILNVRIRRNFAFIQYESQEDATKAIEATNMSKLMDRVISVEYAVKDDDD
RRNGHSPDRGRDRSPGRRGHERGRSPSPVRRERASPDYGRGRSPSPRRERGSPDYGRGHS
RSPPRKERTNSDYGRSRSSRSPRRERPSPDHVREPSPREGRVTPDHGRGSPSPPRERISP
DDYPRGRNPDSKHEPRESPKYEEGESPGDERYQSRSPPARERERSRS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtccatacacttcctgactgatcgatgggcttcgtcagcattccatttcctggctgtg
acaagcttcctcttcttgtttccaagaagagccactctgacatcacaatcccacactatc
ctcagacaccaatgcatttcatgcctcatgaatttagcacagccttcattttcagacacg
ttccctggtagaaaccatgccaccctcaatgcagaggcatcagaatatatggagaaggca
ctcttttcattatcctaccatgagacatccacctttccgttcttgttccttgacatcatt
tatttcatcacgcaaggatttgcatttgtttatatggaggatgatagagatgcggaggat
gcaattcgaggacttgaccgttatgaatatggcagaaaggggcgccgccttcgtgttgag
tggacaaagcaagaacgtgtcacaaggaggcccgagagtgctaaaaaatcttctacgaat
tcgaggccctcaaagacattgtttgttatcaactttgacccatatcatactaggacaagg
gacttggagaggcactttgatccatatgggaagatattgaatgtgaggattagaaggaat
tttgcatttattcaatatgaatcacaagaggatgccaccaaggcaatagaagctacaaac
atgagtaagctgatggatagggttatttcagtggaatatgcagtcaaagatgatgatgat
aggagaaatggccacagccctgataggggccgcgataggtcacctggaaggagaggccat
gaaaggggaagatctccgagccctgttcgcagagagagggctagtcctgattatggccgt
ggccgtagccccagtcctcgtcgagagagggggagtccagattatggccgtgggcatagc
cggagtcccccgcggaaggaaaggactaattctgattatggccgcagccgtagtagccgc
agtcctaggagagagaggcctagtcctgatcatgtccgtgaacccagcccaagagaaggg
agggttactcctgatcatggtcgtggcagcccaagccctccaagagagagaatcagtcct
gatgactatcctcgtggccgcaaccctgattctaagcatgaaccgagagagagtccaaag
tatgaggaaggagagagccctggggatgagagataccagagtcgttctccaccggcacga
gaaagagaaagatcgagatcttga
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