Rhododendron vialii: 131319179
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Entry
131319179 CDS
T09330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rvl
Rhododendron vialii
Pathway
rvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131319179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rvl03019
]
131319179
03012 Translation factors [BR:
rvl03012
]
131319179
Enzymes [BR:
rvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131319179
Messenger RNA biogenesis [BR:
rvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131319179
Translation factors [BR:
rvl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
131319179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
BEX
FoP_duplication
ATPase
Rad17
Motif
Other DBs
NCBI-GeneID:
131319179
NCBI-ProteinID:
XP_058205317
LinkDB
All DBs
Position
3a:8084839..8110662
Genome browser
AA seq
1025 aa
AA seq
DB search
MSLRLVGGTTPLYLAFIFNKNTLSTRHLLLSTSVMSNRPNFQGGRRGGGPNSGGGARRGG
GRGGGGGGGRGEQRWWDPVWRAERLRQQAAEMEVLDENEWWGKMEQFKRGAEQELIIKRN
YSREDQQILSDMAYQLELYFHAYNKGKALVVSKVPLPNYRADLDDRHGSSQKEIRMSTEI
EKRVGNLLGSSKGTVPIDNSPSASSQSGKQSVPGVDTSKPGPVSVTDAGKERVSLELKER
REKMKTPDNVKALQSFREKLPAFKVRSEFLKAVAENQVLVVSGETGCGKTTQLPQFILED
EISALRGANCNIICTQPRRISAISVAARISSERGESLGESVGYQIRLESKCSAQTRLLFC
TTGVLIRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILHDLLPRRPDLRLVLMSATIN
ADLFSKYFGNAPTIHIPGLTFPVAEFFLEDVLEKTRYSIKSEVNNYQGSSRRRGRQQESK
KDPLTELFEEVDIDSHYKSFSMTTRQSLEAWSGSQLDLGLVESTVEYICRYEGDGAILVF
LTGWDDISKLLDKVKTNSFLGDPRKFLVLPLHGSMPTINQREIFDRPPANSRKIVLATNI
AESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYR
LYPKLIHEAMPQYQLPEILRTPLQELCLTIKSLELGTIGTFLAKALQPPDSLSVQNAIEL
LKTIGALDDSEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIASALAHRDPFVL
PINRKEEADAAKRSFAGDSCSDHIALLKAFEAWKDAKRSGNDRAFCWKNFLSPVTLQMME
DMRNQFLDLLSDIGFVDKSRGANAYNQYSKDLEMVSAILCAGLYPNVVQCKRRGKRTAFY
TKEVGAVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFIRDSTNISDYALLMFGGNLVPS
KKGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNKKIEEPGLDISVEGKGVVAAVIE
LLHHT
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtctctacgccttgtcggcggcaccacacctctctacctcgccttcatcttcaacaag
aatactctctctactagacatcttctcctctccacatccgtcatgtctaaccgtcccaat
ttccaaggcggccgtcgcggcggaggccccaacagcggaggcggcgcacgccgtggtggg
ggacgtggcggcggtggcgggggagggcgcggagagcagcggtggtgggaccccgtctgg
cgcgccgaacgcctgagacaacaagcagcagagatggaggttctggatgagaatgagtgg
tggggtaagatggagcagtttaagagaggcgcagagcaagagttgataatcaagcgtaat
tacagtcgggaggaccagcaaattttgtctgatatggcttatcagttagagctttacttt
catgcatataacaaagggaaggcacttgttgtgagcaaagttccattgccgaattaccgt
gcagatcttgatgatcgacatggatcctcacaaaaagagatacgaatgtctaccgaaata
gagaaaagagtggggaatctattgggtagctcgaaaggcacggttcccatagacaattcc
cctagtgcatcatctcaaagtggcaaacagtcggtgcctggtgtagatacttcaaaacct
ggccctgtttcggtgactgatgctggcaaggagagagttagtcttgaacttaaagaaaga
cgagagaaaatgaagacgcctgataatgtgaaggcattgcagtcattcagagagaagctg
cctgcattcaaagtgagatccgagtttttgaaggctgttgcagaaaatcaggtgttggta
gtttctggagagacgggttgtgggaaaactacgcagctccctcagttcattctggaggac
gagatatcagccctccgtggtgccaattgcaatataatatgcactcaacctcgtcgtatt
tctgcaatatctgttgctgcccgaatatcctctgaaaggggagagagtctcggtgaaagt
gttggttaccagatccgtctggaatcaaaatgttcggctcaaacacggttactattttgc
accactggagtgttgattcggcgcctggttcaggacccagatttgactggagttagccat
ttgttagtggatgaaatccatgaaagaggaatgaacgaggactttctcttaataattttg
catgaccttcttccgcgtcgtccagatcttcgtcttgttctaatgagtgccaccattaat
gctgatttattctccaaatactttgggaacgccccaactatccatatcccgggtctgaca
tttcctgtggcagagtttttcctagaagacgtgttggagaaaactcgttacagtatcaaa
tcagaagttaacaactaccaagggagttcaaggagaagggggagacaacaagagtctaaa
aaagatcctttaactgagttgtttgaggaagttgatattgattctcattacaaaagcttc
agcatgacaacaagacaatctcttgaagcttggtctggttcacagcttgatttaggtctt
gtggaatcaacagttgaatacatctgtcgttatgaaggtgatggagccattcttgtattc
ctcactgggtgggatgacatatctaagctgcttgacaaagttaaaacaaatagttttctt
ggggatcccagaaagtttcttgtccttcctcttcatggttcaatgcccaccatcaatcaa
cgtgaaatatttgatcgcccacctgccaactcaagaaaaattgtgctagcaacaaacatt
gctgagagtagtataaccatagatgatgttgtatatgtcattgactgtggaaaggcaaag
gaaaccagttatgatgctcttaacaaactggcctgtctgctgccatcatggatttcaaag
gcttcagcccatcagaggcgtggacgtgctggccgtgtgcaacctggagtttgttataga
ctgtatccgaaattgatccatgaagcaatgccccaatatcaactgcctgaaattcttcga
acaccgttgcaagagctatgcctgactattaaaagtttggagcttggaaccattggaaca
tttttagcaaaagcgcttcagccaccagattccctctctgttcaaaatgcaattgaactt
cttaaaacaattggggctttagatgatagtgaagagctcaccccacttggacgccacctt
tgcactctacctttggacccaaatattggaaagatgctcctcatgggttcaatctttcaa
tgccttaatcctgcattaaccattgcttctgctcttgcacatcgagatccattcgtcctt
ccaataaataggaaagaggaagctgatgcagcaaagagatcttttgctggtgattcttgc
agtgatcacattgcgcttctcaaagcatttgaagcttggaaggatgcaaaacgcagtgga
aatgatagagccttctgttggaaaaatttcctctctccagtaacattgcaaatgatggag
gatatgaggaaccagtttctggatctactgtcagacattggctttgttgataaatccaga
ggcgctaatgcttataaccaatatagtaaagacttggagatggtatctgcaatcctttgt
gctgggctctatccaaatgttgtgcagtgtaaaaggagaggaaaacgtacagcgttctac
accaaagaagttggagcagttgacattcatcctgcatctgtaaatgccggcgtccatctt
ttccctcttccgtacatggtttatagtgaaaaggtgaagacaaccagcatatttataagg
gattccacaaatatatcggactatgctctacttatgtttggtggtaatctcgttcctagc
aaaaaaggagaaggtattgaaatgcttggagggtaccttcatttctctgcttccaagagt
gtgctggagttgatacggaaattgcgaggagagcttgacaagcttctaaacaagaagatt
gaagaaccggggctggacatctctgtcgagggaaagggtgtggttgctgctgtgattgag
ttactgcatcatacttag
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integrated database retrieval system
