Rhododendron vialii: 131319207
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Entry
131319207 CDS
T09330
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rvl
Rhododendron vialii
Pathway
rvl00040
Pentose and glucuronate interconversions
rvl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rvl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
131319207
Enzymes [BR:
rvl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
131319207
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Shr-like_HID
Motif
Other DBs
NCBI-GeneID:
131319207
NCBI-ProteinID:
XP_058205350
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Position
3a:14721002..14734057
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AA seq
500 aa
AA seq
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MLPHTYILFFCLLTSLYPLIRATFNLTLPHQHPNPEAVVQEVQRKLNESISRRHMLSTGS
PSSSCLTGNPIDDCWKCDPNWANNRQNLANCAIGFGSHAVGGKGGQFYVVTDSSDHDAAN
PTPGTLRHAVIQTDPLWIVFSSNMIITLKHELIVNSYKTIDGRGAHVRITGGGCITLQYI
SNVIIHNIEVTHCVPSGNTNVRSSPTHVGWRGKSDGDGISIFNSRDLWIDHCSLSYCADG
LIDAIMGSTGITISNSYFSHHDEVMLLGHDDKYLPDSGMQVTIAFNHFGEKLVQRMPRCR
RGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTAPVDPNAKEVTKRVDTDEGQWSDWN
WRTDGDIMVNGAFFVPSGQGLSAQYEKASSVEPKSAALVSQLTINAGVFGQARENSVSIS
YPGFSGGGGGTNTGSSGNGNGAGSSGDGDGDYFGMIFGSGAPPTALCTTTTTTVLLSLLI
ILTLCISTNHDGLLLLLQLL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctcacacctacattctctttttctgcctcttaacctctctctatccccttatt
agagccactttcaatcttaccctccctcatcagcaccccaaccctgaagctgtggttcaa
gaagtacaaaggaagctaaatgaatctatatccagaagacacatgctgtcgacggggtcc
ccttcgtcgtcgtgcctcaccgggaacccaatcgacgactgctggaagtgcgacccaaac
tgggccaacaaccgccagaacctagccaactgcgccattggcttcggctcccacgccgtc
ggcggcaagggtggccagttctacgtcgtgaccgactcctccgaccatgacgccgccaac
ccgacgcccggcaccctccgccacgccgtcatccagacggatcccctctggatcgtcttc
tcgtcgaacatgatcataaccctcaagcacgagctaatcgtcaacagctacaagactatc
gacgggcgtggcgctcacgtgcggattacggggggcgggtgcattacgctccagtacatt
agcaacgtcataatccacaacatcgaggtcacccactgtgttccatctggtaacactaac
gtacggtcgagcccaacgcacgttgggtggagaggcaaatcggacggtgatgggatatcc
atcttcaactctcgcgacctgtggatcgaccactgctcgctgtcgtactgtgcggacggt
ctgattgacgcgatcatggggtcgacggggataacgatatcaaacagctacttctcgcac
cacgacgaggtgatgctgttggggcacgacgacaagtacctgccggattccgggatgcag
gtgaccatagccttcaaccacttcggtgagaagctggtgcagcgtatgcctcggtgtaga
cgcggctacatacacgtggtgaacaacgatttcaccgagtggcagatgtatgctatcggc
ggtagcgctaaccccaccattaatagtcaggggaatcgctataccgccccggtggaccct
aacgccaaagaggtgacgaagcgcgtggacacggacgagggccagtggtcggactggaac
tggagaacggatggggacataatggtaaatggagcattcttcgtgccatctggtcaaggg
ctaagcgcccagtacgaaaaggcctccagtgtcgagcccaagtccgctgcgctcgtgagc
cagcttacaatcaacgctggcgtcttcggtcaggccagggagaacagcgtgagcatatcg
taccctggattcagtggcggtggcggtgggaccaacacgggcagctccggaaatgggaac
ggtgcggggtccagtggcgatggcgatggcgactactttggaatgatattcgggagcggc
gcgccaccaacagctttgtgtacaaccaccaccaccaccgtcctcttatctcttttgatt
atcttgactttatgtattagcaccaaccatgatggtctattattattgttacaattatta
tag
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